Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1165
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0090 - 9071438-9072346,9072497-9072535                           30   1.4  
05_01_0575 + 5112988-5114082                                           30   1.4  
02_01_0517 + 3733921-3735012                                           30   1.4  
01_01_1181 + 9410310-9411329                                           30   1.4  
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759...    29   2.4  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   3.2  

>10_05_0090 - 9071438-9072346,9072497-9072535
          Length = 315

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 KCDVKVNLSVLCRTPVH*QLESYQERH 320
           KC  + + S +CRTP H  +E YQE+H
Sbjct: 220 KCGTRGHWSRICRTPKH-LIELYQEKH 245


>05_01_0575 + 5112988-5114082
          Length = 364

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 KCDVKVNLSVLCRTPVH*QLESYQERH 320
           KC  + + S +CRTP H  +E YQE+H
Sbjct: 269 KCGTRGHWSRICRTPKH-LIELYQEKH 294


>02_01_0517 + 3733921-3735012
          Length = 363

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 KCDVKVNLSVLCRTPVH*QLESYQERH 320
           KC  + + S +CRTP H  +E YQE+H
Sbjct: 268 KCGTRGHWSRICRTPKH-LIELYQEKH 293


>01_01_1181 + 9410310-9411329
          Length = 339

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 KCDVKVNLSVLCRTPVH*QLESYQERH 320
           KC  + + S +CRTP H  +E YQE+H
Sbjct: 244 KCGTRGHWSRICRTPKH-LIELYQEKH 269


>01_07_0189 +
           41875088-41875149,41875322-41875392,41875809-41875902,
           41876285-41876360,41877130-41877293,41877428-41877605,
           41877687-41877809,41877895-41877990,41878091-41878372
          Length = 381

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 12  HNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQV 173
           HN  +H ++NR  LG  F  SW   +KE+     K +++ +E   V F  LI+V
Sbjct: 181 HNRVQHSSSNRHGLGHAFRNSW--RRKEHES---KSVKKTVEIGMVEFVGLIKV 229


>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 141 NDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCD 248
           ND+  TSLI   + ++       LR+F+EW  +  +
Sbjct: 414 NDIKITSLINTAELLKKEKSTDWLREFKEWMDENME 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,169
Number of Sequences: 37544
Number of extensions: 302656
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)