Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1165
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 48 4e-06
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 38 0.008
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 38 0.008
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 38 0.008
AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 30 1.2
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical pr... 29 3.8
U29537-6|AAO38648.1| 340|Caenorhabditis elegans Egg laying defe... 28 6.6
U29537-5|AAO38650.1| 414|Caenorhabditis elegans Egg laying defe... 28 6.6
U29537-4|AAO38647.1| 450|Caenorhabditis elegans Egg laying defe... 28 6.6
U29537-3|AAO38646.1| 457|Caenorhabditis elegans Egg laying defe... 28 6.6
U29537-2|AAK31508.1| 465|Caenorhabditis elegans Egg laying defe... 28 6.6
U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69384-9|CAD89747.1| 497|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69383-14|CAA93405.3| 497|Caenorhabditis elegans Hypothetical p... 27 8.7
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 LLRHNFNRHYTTNRAPLGFHFHASWLK--SKKEYRDELIKFIEEMLEKNDVYFTSLIQVI 176
++ NF R Y+ NRAP +A +L+ + + KF+ M + DVY ++ Q+I
Sbjct: 1737 IITRNFERSYSANRAPYVLSLNADFLQLGGHNKGMKAVQKFLNRMSAQKDVYIVTIKQLI 1796
Query: 177 QWMQNPTELSSLR 215
WM+ P +S ++
Sbjct: 1797 DWMKRPVPISEMK 1809
Score = 44.4 bits (100), Expect = 7e-05
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 266 CSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPQG 382
C +PN C +T L + + TC+ CP YPW+ +P G
Sbjct: 1835 CDIPNKCLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 3 LLRHNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQW 182
+L+ NF HY TN H + + +++ +KFI ++K DV+ + Q+I +
Sbjct: 252 MLQRNFMNHYKTN--------HNGAVYALRDF----LKFI---VQKQDVFVVTGSQIIDY 296
Query: 183 MQNPTELSSLRDFQEWK 233
M+NP +L++++ + W+
Sbjct: 297 MRNPVDLNNIKSLRSWQ 313
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 CSLPNACPLTTRELPGETLRLFT-CMECPNNYPWI 367
C P C + R G+ F C CP +YPWI
Sbjct: 325 CENPTTCSFSGRAR-GQFAHSFRMCGVCPKSYPWI 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 3 LLRHNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQW 182
+L+ NF HY TN H + + +++ +KFI ++K DV+ + Q+I +
Sbjct: 2321 MLQRNFMNHYKTN--------HNGAVYALRDF----LKFI---VQKQDVFVVTGSQIIDY 2365
Query: 183 MQNPTELSSLRDFQEWK 233
M+NP +L++++ + W+
Sbjct: 2366 MRNPVDLNNIKSLRSWQ 2382
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 CSLPNACPLTTRELPGETLRLFT-CMECPNNYPWI 367
C P C + R G+ F C CP +YPWI
Sbjct: 2394 CENPTTCSFSGRAR-GQFAHSFRMCGVCPKSYPWI 2427
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 3 LLRHNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQW 182
+L+ NF HY TN H + + +++ +KFI ++K DV+ + Q+I +
Sbjct: 1193 MLQRNFMNHYKTN--------HNGAVYALRDF----LKFI---VQKQDVFVVTGSQIIDY 1237
Query: 183 MQNPTELSSLRDFQEWK 233
M+NP +L++++ + W+
Sbjct: 1238 MRNPVDLNNIKSLRSWQ 1254
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 CSLPNACPLTTRELPGETLRLFT-CMECPNNYPWI 367
C P C + R G+ F C CP +YPWI
Sbjct: 1266 CENPTTCSFSGRAR-GQFAHSFRMCGVCPKSYPWI 1299
>AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical
protein Y51A2D.7a protein.
Length = 989
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 188 KPYRIIITP*LPRMETR*M*RQSQPFCSLPNACPLTTRELPGETLRLFTCME 343
+ +R+++ P +P ETR R +PF PN L T G T +L +E
Sbjct: 548 RAHRLLVRPGIPA-ETRQHPRSHEPFAQFPNDFRLGTAHGAGRTEKLLRILE 598
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 257 QPFCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPQ 379
QP P C T E+ T+ + P +YP +LDPQ
Sbjct: 289 QPTEGCPTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDPQ 329
>Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical
protein ZK455.5 protein.
Length = 281
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 36 TNRAPL--GFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQV 173
+++ PL G ++HA S K Y ++L K I ++ Y TSL +V
Sbjct: 187 SDKGPLIAGGYYHAKPTSSSKNYFNKLAKDISWWYAPDNAYMTSLCEV 234
>U29537-6|AAO38648.1| 340|Caenorhabditis elegans Egg laying
defective protein 44,isoform d protein.
Length = 340
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 18 FNRHYTTNRAPLG-FHFHASWLK-SKKEYRDELIKFIEEMLEKNDV 149
++ ++ N P FH ++++K +K R EL+K IE LEK+D+
Sbjct: 125 YHNLFSNNPLPTKQFHLFSAYVKCNKTSLRTELVK-IENTLEKDDI 169
>U29537-5|AAO38650.1| 414|Caenorhabditis elegans Egg laying
defective protein 44,isoform f protein.
Length = 414
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 18 FNRHYTTNRAPLG-FHFHASWLK-SKKEYRDELIKFIEEMLEKNDV 149
++ ++ N P FH ++++K +K R EL+K IE LEK+D+
Sbjct: 199 YHNLFSNNPLPTKQFHLFSAYVKCNKTSLRTELVK-IENTLEKDDI 243
>U29537-4|AAO38647.1| 450|Caenorhabditis elegans Egg laying
defective protein 44,isoform c protein.
Length = 450
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 18 FNRHYTTNRAPLG-FHFHASWLK-SKKEYRDELIKFIEEMLEKNDV 149
++ ++ N P FH ++++K +K R EL+K IE LEK+D+
Sbjct: 235 YHNLFSNNPLPTKQFHLFSAYVKCNKTSLRTELVK-IENTLEKDDI 279
>U29537-3|AAO38646.1| 457|Caenorhabditis elegans Egg laying
defective protein 44,isoform b protein.
Length = 457
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 18 FNRHYTTNRAPLG-FHFHASWLK-SKKEYRDELIKFIEEMLEKNDV 149
++ ++ N P FH ++++K +K R EL+K IE LEK+D+
Sbjct: 242 YHNLFSNNPLPTKQFHLFSAYVKCNKTSLRTELVK-IENTLEKDDI 286
>U29537-2|AAK31508.1| 465|Caenorhabditis elegans Egg laying
defective protein 44,isoform a protein.
Length = 465
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 18 FNRHYTTNRAPLG-FHFHASWLK-SKKEYRDELIKFIEEMLEKNDV 149
++ ++ N P FH ++++K +K R EL+K IE LEK+D+
Sbjct: 250 YHNLFSNNPLPTKQFHLFSAYVKCNKTSLRTELVK-IENTLEKDDI 294
>U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical
protein R02F2.7 protein.
Length = 693
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 81 KSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSL 212
++KKE D ++KF+EE+ + L ++I M ++L SL
Sbjct: 466 ETKKEVFDSVVKFVEEIPGAESIDEMKLFKLIIEMYGGSQLESL 509
>Z69384-9|CAD89747.1| 497|Caenorhabditis elegans Hypothetical
protein F13E9.1 protein.
Length = 497
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 72 SWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSL 212
S+L KK ++ ++FIEE + + Y +L+++ W Q + SL
Sbjct: 69 SFLPPKKRLGNKDLEFIEERRLELEKYVRALLELEVWYQKQKNVHSL 115
>Z69383-14|CAA93405.3| 497|Caenorhabditis elegans Hypothetical
protein F13E9.1 protein.
Length = 497
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 72 SWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSL 212
S+L KK ++ ++FIEE + + Y +L+++ W Q + SL
Sbjct: 69 SFLPPKKRLGNKDLEFIEERRLELEKYVRALLELEVWYQKQKNVHSL 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,242
Number of Sequences: 27780
Number of extensions: 299787
Number of successful extensions: 877
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -