Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1164
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    28   1.2  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   4.8  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   8.5  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 17  KTDLNLL-QRLVPTAIEKHISEREIT 91
           K DLN+L   L+P ++  HI EREI+
Sbjct: 741 KNDLNVLTNNLIPYSLTDHIHEREIS 766


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 505 VLSYFTVFKHQLIT---KKPYNSIIMNAIMIFNLYYIVDYENRIGHG 374
           VLS  + F ++L T   K+ Y   I++  + F++  IVD     GHG
Sbjct: 260 VLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIVDGATAWGHG 306


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 505 VLSYFTVFKHQLIT---KKPYNSIIMNAIMIFNLYYIVDYENRIGHG 374
           VLS  + F ++L T   K+ Y   I++  + F++  IVD     GHG
Sbjct: 260 VLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIVDGATAWGHG 306


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 134 IHEENFTENFSLFEYQVCCCIHFSTIKI 217
           I+E N T NF + EY+    I FST  +
Sbjct: 293 IYEMNITYNFPVTEYKGTKTIMFSTTSV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,511
Number of Sequences: 5004
Number of extensions: 34471
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)