Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1163
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   3.7  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   6.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.5  

>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 85  DNLQYQFFPVSSGSVQFKVRAAND 156
           DNLQY F    SG++ + +    D
Sbjct: 201 DNLQYSFDNQCSGTIDWALPKQED 224


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 85  DNLQYQFFPVSSGSVQF 135
           DNLQY F    SG++ +
Sbjct: 210 DNLQYSFDNQCSGTIDW 226


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 369 EAIPFISWSDPEPFPVY 419
           E +PF++     PFP Y
Sbjct: 352 ETLPFLNLQQQLPFPGY 368


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 87  QPSIPILPCFKWI 125
           QP  P+LP +KW+
Sbjct: 189 QPQ-PVLPTYKWM 200


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 87  QPSIPILPCFKWI 125
           QP  P+LP +KW+
Sbjct: 189 QPQ-PVLPTYKWM 200


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 87  QPSIPILPCFKWI 125
           QP  P+LP +KW+
Sbjct: 189 QPQ-PVLPTYKWM 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,464
Number of Sequences: 336
Number of extensions: 2136
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)