Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1163
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    29   0.23 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.23 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   4.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   4.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   4.8  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         24   8.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    24   8.5  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    24   8.5  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -3

Query: 344 AAIPTNPKTTIFPSVKNSGAFNFNLIGLGSFFLMTLLAFPQPPIITSYIGSDSCGPVVSA 165
           AA  T      FP       F   +  + S F+++LL     P +TSY G D+   V++ 
Sbjct: 292 AAAETENPAKAFPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHGVDASPFVLAI 351

Query: 164 MWASFAAL 141
             A+  AL
Sbjct: 352 KDANIKAL 359


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 397 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 305
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 403 SGSDQDMNGIASPSRPAEI-MPLSQRT 326
           SGS  D+  I SP+ PAE   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 359 SSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSFFLMTLLAF 228
           S+ DN  +  NP ++I P   N   F   +IGL  F    L AF
Sbjct: 499 SAVDNYTLQINPHSSINPEHLNYFRFIGRVIGLAIFHRRFLDAF 542


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 386 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGS 255
           Y WN    A SG  +A+    ++T   SVK S   +F  +GLG+
Sbjct: 203 YVWN----ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN 242


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 332 TNPKTTIFPSVKNSGAFNFNL 270
           T+PK  I  +V+N G F ++L
Sbjct: 181 TSPKGIIMSAVRNHGCFQYSL 201


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 403 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSIS 275
           S +  D  G  S   P+E+MPL  + +      P  +PG +++
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVN 256


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 407 RFRIRPGYEWNSFTLASSGDN 345
           RF IRPG+ W+     +  +N
Sbjct: 262 RFNIRPGHRWDGIIRGNGFEN 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,210
Number of Sequences: 5004
Number of extensions: 36062
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)