Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1163
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.38
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 1.2
12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362 29 2.0
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 3.6
11_02_0015 - 7355989-7357092 28 3.6
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 27 4.7
12_02_1224 + 27158810-27161366,27161593-27161969 27 8.2
07_03_1197 + 24719746-24720081,24721726-24721976,24722065-247222... 27 8.2
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 27 8.2
03_05_0233 - 22182565-22182897,22183025-22183193,22183287-221835... 27 8.2
01_07_0225 - 42126650-42127020,42127057-42127150,42127229-421275... 27 8.2
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.38
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 297 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 407
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 285 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 422
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362
Length = 340
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 288 GFQFQ-PYRAWFFFPDDALSVSPAS 217
GF F P A FFFPDD S +P+S
Sbjct: 2 GFGFMIPLAALFFFPDDFPSAAPSS 26
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -1
Query: 394 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 290
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_02_0015 - 7355989-7357092
Length = 367
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 247 RKKEPSP-----IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 384
R+ +P P +RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 13 RRTKPKPPMSRLMRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +3
Query: 243 HQEKRTKPDK-----VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDP 401
H+ KR K + V++ G+ ++ +W+ G+IS GR W DP
Sbjct: 73 HRNKRLKIEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDP 132
Query: 402 EP 407
+P
Sbjct: 133 DP 134
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 327 VRWDSGIISAGREGEAI-PFISWS 395
V+W SG ++AG EGEA+ + WS
Sbjct: 894 VQWVSGKVAAGGEGEALDKRLEWS 917
>07_03_1197 +
24719746-24720081,24721726-24721976,24722065-24722233,
24722339-24722683
Length = 366
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 341 AIPTNPKTTIFPSVKNSGAFNFNLIGLGSFF 249
A+ T PK T+FP + AF+ +LIG +F
Sbjct: 200 AVMTIPKGTLFPMCGMNLAFDRDLIGPAMYF 230
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 97 YQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGW 225
Y FP S + Q R A+D A PQ+ + ++ M+ W
Sbjct: 226 YAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTMLPCW 268
>03_05_0233 -
22182565-22182897,22183025-22183193,22183287-22183537,
22183816-22183966,22184406-22184716
Length = 404
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 341 AIPTNPKTTIFPSVKNSGAFNFNLIGLGSFF 249
A+ T PK T+FP + AF+ +LIG +F
Sbjct: 242 AVMTVPKGTLFPMCGMNLAFDRDLIGPAMYF 272
>01_07_0225 -
42126650-42127020,42127057-42127150,42127229-42127523,
42127604-42127809,42127898-42127945,42128078-42128296
Length = 410
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 61 NVMDVATDDNLQYQFFPVSSGSVQFKVRAANDAHIALTTGPQ 186
N D T + + P+ Q +R NDA +AL T PQ
Sbjct: 235 NEYDTRTREGTTVETGPLRDRVAQELLRTVNDAGVALGTAPQ 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,373
Number of Sequences: 37544
Number of extensions: 251744
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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