Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1163
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    29   1.8  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z68134-3|CAA92225.1|   97|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    27   5.5  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    27   7.3  
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    27   7.3  
Z93377-2|CAB07575.2|  326|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    26   9.7  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 415 TGKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 305
           +G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 158 SGSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 116 ETGKNWY*RLSSVATSMTLAMIVV 45
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


>Z68134-3|CAA92225.1|   97|Caenorhabditis elegans Hypothetical
           protein T27A8.4 protein.
          Length = 97

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 403 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSIST 272
           SG +QD+    + S   EI  +  ++    YSPP   P   + T
Sbjct: 32  SGENQDLGREENGSEEDEIQQVETQSDDGNYSPPSGTPETEVET 75


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 264 PDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF--ISWSDPEPFPVYY 422
           P  VEIE+  I++GG+     + W +      REG  I +  ++ +  + FP Y+
Sbjct: 3   PTNVEIETKVIMDGGKILETTINWKADEKDTRREGFYIRYTAVNSTCQKHFPGYF 57


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 380  WNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSF 252
            W  F   SS  NA  PTN  T  FPS       N +L+   S+
Sbjct: 2996 WAKFEEISSSSNAEWPTNISTYKFPSFSEKNV-NEDLLNKSSW 3037


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 276 QPYRAWFFFPDDALSVSPASNHHLIHRIRFLRACRERDVGIIRC 145
           +P   WFF  DD + ++ +  H++   +  + +    D G  +C
Sbjct: 271 KPTYKWFF-EDDEVPIARSDKHNVEEGLLIIESLNSEDAGTYKC 313


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 276 QPYRAWFFFPDDALSVSPASNHHLIHRIRFLRACRERDVGIIRC 145
           +P   WFF  DD + ++ +  H++   +  + +    D G  +C
Sbjct: 244 KPTYKWFF-EDDEVPIARSDKHNVEEGLLIIESLNSEDAGTYKC 286


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 276 QPYRAWFFFPDDALSVSPASNHHLIHRIRFLRACRERDVGIIRC 145
           +P   WFF  DD + ++ +  H++   +  + +    D G  +C
Sbjct: 244 KPTYKWFF-EDDEVPIARSDKHNVEEGLLIIESLNSEDAGTYKC 286


>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 354 AGREGEAIPFISWSDPEPF 410
           AGR+GEA+ F+ W+D   F
Sbjct: 432 AGRKGEAMSFLWWNDRSNF 450


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 276 QPYRAWFFFPDDALSVSPASNHHLIHRIRFLRACRERDVGIIRC 145
           +P   WFF  DD + ++ +  H++   +  + +    D G  +C
Sbjct: 244 KPTYKWFF-EDDEVPIARSDKHNVEEGLLIIESLNSEDAGTYKC 286


>Z93377-2|CAB07575.2|  326|Caenorhabditis elegans Hypothetical
           protein F13A7.3 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 305 SVKNSGAFNFNLIGLGSFFLMT 240
           S  N+G F F L G+G FF+ T
Sbjct: 87  SFSNTGPFMFTLRGVGVFFITT 108


>Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 284 FNFNLIGLGSFFLMTLLAFPQPPIITSYIGSD 189
           F   ++G  S+ L++   FP  P+ + YIG D
Sbjct: 138 FMIPILGGVSWTLVSWFCFPMNPVTSGYIGPD 169


>Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 284 FNFNLIGLGSFFLMTLLAFPQPPIITSYIGSD 189
           F   ++G  S+ L++   FP  P+ + YIG D
Sbjct: 138 FMIPILGGVSWTLVSWFCFPMNPVTSGYIGPD 169


>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 202 YEVMIGGWGNAKSVIRKKEPSPIRLKLKAPEFLTEGNIVVFGFV 333
           +EV++G   + + V RKK    IR+ LK+ + +  G + + GF+
Sbjct: 122 FEVVLGP--DFEGVDRKKTSEIIRIMLKSVKKVDVGKLTITGFI 163


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 320 TTIFPSVKNSGAFNFNLIGLGSFFLMTLLAFPQPPIITSYIGS 192
           TT+     N+G FN+N++ L    +++LL  P+ PI  S++ +
Sbjct: 126 TTLTLFTGNNGFFNYNILVL----MVSLLQTPRVPIGASFLAA 164


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 320 TTIFPSVKNSGAFNFNLIGLGSFFLMTLLAFPQPPIITSYIGS 192
           TT+     N+G FN+N++ L    +++LL  P+ PI  S++ +
Sbjct: 389 TTLTLFTGNNGFFNYNILVL----MVSLLQTPRVPIGASFLAA 427


>AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical
           protein C04F1.1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 323 KTTIFPSVKNSGAFNFNLIGLG 258
           K  +FP + N+G  NF  IG+G
Sbjct: 107 KEVLFPKIFNAGPHNFFTIGVG 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,257,208
Number of Sequences: 27780
Number of extensions: 198854
Number of successful extensions: 586
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)