Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1162
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 28 1.0
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 28 1.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 3.1
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 27 3.1
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 27 3.1
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 5.4
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 7.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.5
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.5
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/79 (21%), Positives = 31/79 (39%)
Frame = -3
Query: 596 PTAKTGPEDHPTLPRGQLRFVFASKEREADWNSNLGRNRVELERNFSKNASESPPFIRIN 417
P + D PT + + +S A + + + L R S + + P ++
Sbjct: 255 PVSNADANDSPTRQNARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLY 314
Query: 416 KNLSGSTENLLISNVRRSD 360
LSG +E + N+R D
Sbjct: 315 DMLSGRSERPELGNIREED 333
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 644 TRDQRPPLVIPRDHPVPTAKTGPEDHPTLPRGQLRFVF 531
++ +P +P HP+P E+H ++PR F +
Sbjct: 160 SKPSKPRKKVPVSHPLPPTPPSREEHVSVPRESSLFTY 197
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 506 WNSNLGRNRVELERNFSKNASESPPFIRINKNLSGSTENLLISNVRRSDEK 354
W N+ R E + +KNA +S PFI+ ++ N ++ RS+E+
Sbjct: 138 WEENIARVDRLTEIDKTKNAKKSEPFIK--RSTRKVMSNFTAGDIVRSEEE 186
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -3
Query: 629 PPLVIPRDHPVPTAKTGPEDHPTLPRGQLRFVFASKEREADWNSNLGRNRVELERNF--S 456
P ++ PRD P K GPE P + A K + S + R E ++F +
Sbjct: 366 PSVLSPRDRVNPVMKIGPETKPVPSKLSTALHAARKSTDGSLGSRVKVLREE-SQSFVPT 424
Query: 455 KNA-SESPPFIRINKNLSGSTENLL 384
K+A +E I++ ++LS +T + L
Sbjct: 425 KSAVTEQVEPIQLIRSLSANTVSRL 449
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 566 PTLPRGQLRFVFASKEREADWNSNLGRNRVELERNFSK 453
PT P G + FV ASK+ D + L + E E K
Sbjct: 234 PTYPSGSIGFVVASKDASIDLSKPLRKWSPEEENKLCK 271
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 225 KRVSKFIILLKLFHPYVTVCNTSRSQTAD*SYFDVIYRGARLI 97
K++S+ + LL F+ VTV N S A YF IY + +I
Sbjct: 267 KKLSESLDLLDDFNYQVTVSNKSFVDIARTEYFITIYSDSNVI 309
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 7 QQFTFLICIYIIKQTMQNIKIEFETSVGNTD*PC 108
Q F+F YI+ + +QN+ ++ +++ GN + C
Sbjct: 444 QTFSFESSNYIVAEPIQNVILKIKSNWGNPNYTC 477
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 458 SKNASESPPFIRINKNLSGSTENLLISNVRRSDEKISGL 342
S N +PP I N N S S + ++ + +D + GL
Sbjct: 229 SHNLPNAPPSIPANSNNSASPNQRIKASPKHADTDVLGL 267
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 639 GSASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICL 532
G+ASS+ GS D RG+P + QR AQ+ +
Sbjct: 457 GAASSMNAGEGSEELDFASVQRGNPEM-QRRAQMVI 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,063
Number of Sequences: 5004
Number of extensions: 53607
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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