Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1162
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    29   2.4  
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    28   7.4  
02_05_0653 + 30654615-30654666,30655478-30655515,30655879-306559...    28   7.4  

>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 560 LPRGQLR-FVFASKEREADWNSNLGRNRVELERNFSKN 450
           L RG+L+ F+      + DWNSNL  ++V  + + S+N
Sbjct: 305 LERGELQAFIVGINFEDIDWNSNLAADQVMADFDTSRN 342


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 334 RIYNPLIFSSDLLTFEISRFSVEPLRFLLILMK 432
           RI N LI   D +TF+   FSV P  FLL+++K
Sbjct: 502 RILNDLI---DSVTFDNFLFSVSPYGFLLLIIK 531


>02_05_0653 +
           30654615-30654666,30655478-30655515,30655879-30655973,
           30656350-30656484,30656786-30656912,30657907-30657921
          Length = 153

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 587 WLSVLGDPVVSPTEDADPSW 646
           WL  LG  +   TEDAD SW
Sbjct: 18  WLRTLGFGIFGATEDADGSW 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,329,074
Number of Sequences: 37544
Number of extensions: 323206
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)