Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1162
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13597| Best HMM Match : PH (HMM E-Value=1.1) 31 0.81
SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87) 29 3.3
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 4.3
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3) 28 5.7
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 28 5.7
SB_32604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 28 7.6
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012) 28 7.6
SB_49162| Best HMM Match : HTH_1 (HMM E-Value=2.4) 28 7.6
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 7.6
>SB_13597| Best HMM Match : PH (HMM E-Value=1.1)
Length = 160
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 599 VPTAKTGPEDHPTLPRGQLRFVFASKE---READWNSNL 492
VP PE+ P P QL+F+F SK+ R +W S++
Sbjct: 45 VPEEDEPPEESPASPTDQLKFIFPSKQGSHRVQEWLSDV 83
>SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)
Length = 363
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 414 KSKRFDGESADFKCQKIRRENKWVINSYYLTIDLKILRK 298
KS DG DF C + ENK VI S + +++++
Sbjct: 193 KSSSLDGAREDFPCLRTYLENKCVIGSMTTNSEFEVVKQ 231
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = -3
Query: 650 PTTRDQRPPLVIPRDHPVPTAKTGPEDHPTLPRGQLRFVFASKEREADWNSNLGRNRVEL 471
PTT P V + P+P+ P LP G+ +F W+ G+ L
Sbjct: 846 PTTTTNPTPSVTNGNSPIPSGT--PTQGVVLPVGRTPRIFLRLRLALTWSQFCGKLEDSL 903
Query: 470 ERNFSKNASE 441
+ +KN ++
Sbjct: 904 KHQIAKNVAD 913
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = -2
Query: 645 HEGSASSVGDTTGSPSTDSQDGTRGSPNLTQRTA-----QICLCKQGTRGR---LELQFR 490
H+ SASS +T+ T L R + Q+ + K G RG+ L F
Sbjct: 66 HKRSASSTSQELKLKTTEEHVSTVIGKGLGHRRSKSTDYQLEVAKGGERGKSFNLRKFFS 125
Query: 489 KEPG*ARAELQQECFRKSPFHK 424
K+P + CFR+ P H+
Sbjct: 126 KDPRSREPRVPSTCFRRPPEHR 147
>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
Length = 391
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 512 PLVPCLQRQI*AVLWVRLGDPLVPSWLSVLGDPVVSPTEDADPS 643
P+VP L + A+ + GDP++PS G+PVV DP+
Sbjct: 287 PVVPSLNGKDPAIPSLNGGDPVIPSLNG--GEPVVPSLNGKDPA 328
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 629 PPLVIPRDHPV-PTAKTGPEDHPTLPRGQLRFVFASKEREADWNSNLGRNRVELERNFSK 453
PP + D P AK PED P P G+ A K+ E + + E +R+F+K
Sbjct: 120 PPAMSANDQNADPNAK--PEDIPLGPDGKPLSKKAMKKMEKEAEKEKKKAEREAQRDFAK 177
Query: 452 NASESPPFIRINKNLSGS 399
+ P ++ + S S
Sbjct: 178 DRYAVLPLLQSKEKTSAS 195
>SB_32604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 414 KSKRFDGESADFKCQKIRRENKWVINSYYLTIDLKILRK 298
KS DG DF C + ENK VI S + +++ +
Sbjct: 202 KSSSVDGAREDFPCLRTYLENKCVIGSMTTNSEFEVVEQ 240
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 452 NASESPPFIRINKNLSGSTENLLISNVRRSDEKISGL 342
NASE P ++ S T++ N R SD ISGL
Sbjct: 826 NASEDDPTPEDDRRNSSETQDSTSKNRRESDSAISGL 862
>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
Length = 983
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 521 PCLQRQI*AVLWVRLGDPLVPSWLSVLGDPVVSPTED 631
P +QR + V W+ +P +P+ L G P+ TE+
Sbjct: 264 PVIQRGLDLVNWLERSEPRIPAGLRHSGSPMSLATEE 300
>SB_49162| Best HMM Match : HTH_1 (HMM E-Value=2.4)
Length = 311
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 626 PLVIPRDHPVPTAKTG 579
PL++P+DH V TAK G
Sbjct: 260 PLILPKDHHVTTAKDG 275
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 595 RQPRRDQRITQPYPEDSSDLSLQARNERQTGT 500
R R+D+ +P PE SSD S + N+ +G+
Sbjct: 422 RNQRKDKAKREPTPESSSDSSDDSSNDSDSGS 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347,669
Number of Sequences: 59808
Number of extensions: 381816
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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