Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1162
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical pr... 35 0.058
AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guany... 35 0.058
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 30 1.2
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 30 1.2
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 30 1.2
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 30 1.2
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 2.2
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 2.2
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ... 29 2.2
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.8
U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine rec... 28 6.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 8.7
AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical protein
F57F5.2 protein.
Length = 945
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/101 (24%), Positives = 40/101 (39%)
Frame = -2
Query: 651 SYHEGSASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICLCKQGTRGRLELQFRKEPG*A 472
S + S +GD + +D +L +RT K T RL Q E
Sbjct: 838 SLPSATPSEIGDAISKKKLEKEDSNSSMSSLDERTT--VSAKPTTTRRLLNQKDLEKEKK 895
Query: 471 RAELQQECFRKSPFHKNQ*KSKRFDGESADFKCQKIRRENK 349
R+ + S H + +SK+ + + KC+ IR +NK
Sbjct: 896 RSSMAGSSVTSSSAHSHSIRSKKDTRDKSRCKCEDIRADNK 936
>Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical protein
F57F5.2 protein.
Length = 945
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/101 (24%), Positives = 40/101 (39%)
Frame = -2
Query: 651 SYHEGSASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICLCKQGTRGRLELQFRKEPG*A 472
S + S +GD + +D +L +RT K T RL Q E
Sbjct: 838 SLPSATPSEIGDAISKKKLEKEDSNSSMSSLDERTT--VSAKPTTTRRLLNQKDLEKEKK 895
Query: 471 RAELQQECFRKSPFHKNQ*KSKRFDGESADFKCQKIRRENK 349
R+ + S H + +SK+ + + KC+ IR +NK
Sbjct: 896 RSSMAGSSVTSSSAHSHSIRSKKDTRDKSRCKCEDIRADNK 936
>AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guanylyl
cyclase GCY-33 protein.
Length = 945
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/101 (24%), Positives = 40/101 (39%)
Frame = -2
Query: 651 SYHEGSASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICLCKQGTRGRLELQFRKEPG*A 472
S + S +GD + +D +L +RT K T RL Q E
Sbjct: 838 SLPSATPSEIGDAISKKKLEKEDSNSSMSSLDERTT--VSAKPTTTRRLLNQKDLEKEKK 895
Query: 471 RAELQQECFRKSPFHKNQ*KSKRFDGESADFKCQKIRRENK 349
R+ + S H + +SK+ + + KC+ IR +NK
Sbjct: 896 RSSMAGSSVTSSSAHSHSIRSKKDTRDKSRCKCEDIRADNK 936
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 458 SKNASESPPFIRINKNLSGSTENLLISNVRRSDE 357
+K+ SE P F + K ++ ++E LL+ VRR +E
Sbjct: 1335 AKDCSEQPRFAVLAKKINKNSEELLVKVVRREEE 1368
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 458 SKNASESPPFIRINKNLSGSTENLLISNVRRSDE 357
+K+ SE P F + K ++ ++E LL+ VRR +E
Sbjct: 1335 AKDCSEQPRFAVLAKKINKNSEELLVKVVRREEE 1368
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 458 SKNASESPPFIRINKNLSGSTENLLISNVRRSDE 357
+K+ SE P F + K ++ ++E LL+ VRR +E
Sbjct: 1335 AKDCSEQPRFAVLAKKINKNSEELLVKVVRREEE 1368
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 458 SKNASESPPFIRINKNLSGSTENLLISNVRRSDE 357
+K+ SE P F + K ++ ++E LL+ VRR +E
Sbjct: 1335 AKDCSEQPRFAVLAKKINKNSEELLVKVVRREEE 1368
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 609 GSPSTDSQDGTRGSPNLTQRTAQICLC--KQGTRGRLELQFRK 487
G+ D +G G+P L + A+ C C ++G GR + RK
Sbjct: 303 GAAGEDGPEGPPGAPGLPGKDAEYCKCPGREGDAGRSARRHRK 345
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 609 GSPSTDSQDGTRGSPNLTQRTAQICLC--KQGTRGRLELQFRK 487
G+ D +G G+P L + A+ C C ++G GR + RK
Sbjct: 303 GAAGEDGPEGPPGAPGLPGKDAEYCKCPGREGDAGRSARRHRK 345
>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
protein F54C4.3 protein.
Length = 1145
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Frame = -3
Query: 641 RDQRPPLVIPRDHPV-----PTAKTGPEDHPTLPRGQLRFVF------ASKEREADWNSN 495
++QRP + +PR + PTA T PED+ P Q+ + +E E W+
Sbjct: 1022 KEQRPIVYVPRQAKMAMSSTPTAPTPPEDYDGPPGHQMTTILQHQRQAKQEEEEEQWS-- 1079
Query: 494 LGRNRVELERNFSKNASESPP 432
G EL A+ SPP
Sbjct: 1080 -GEYDDELHEQEHDPATSSPP 1099
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 494 LGRNRVELERNFSKNASESPPFI-RINKNLS-GSTENLLISNVRRSDEKISGL 342
+ RN++EL+R ++ S+ P F+ ++ N S S EN L S + + +I L
Sbjct: 208 MARNQLELKRLTAEKVSQEPSFLSKLWSNFSENSNENNLQSQISKMQNEIKPL 260
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -2
Query: 627 SVGDTTGS------PSTDSQDGTRGSPNLTQRTAQICLCKQGTRG 511
+V TTGS PS D + RG+P + T+ LC+ G RG
Sbjct: 1419 TVAGTTGSVVSKSTPSPDQEKCPRGNPLIYPSTSSPVLCQPGKRG 1463
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 639 GSASSVGDTTGSPSTDSQDGTRGSPNLTQ 553
G+A G T G P TD +DG G P + Q
Sbjct: 98 GAAGEDG-TPGEPGTDGEDGGNGMPGVAQ 125
>U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine
receptor, class v protein17 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -3
Query: 461 FSKNASESPPFIRINKNLSGSTENLLISNVRRSD 360
F+K+ S+ F+ K L G+TE+ L+S V++++
Sbjct: 273 FNKDVSKQVRFMISGKKLVGATESSLVSTVKQTN 306
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 636 SASSVGDTTGSPSTDSQDGTRGSPNLTQ 553
S + +G +T PST + T G P TQ
Sbjct: 979 STTQIGSSTTVPSTQAPSSTSGGPTTTQ 1006
>AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical
protein C41D11.4 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 650 PTTRDQRP--PLVIPRDHPVPTAKTGPEDHPTL 558
P +++P PL I +DH P K PE P+L
Sbjct: 58 PIKMEKKPMVPLRIEQDHQTPIRKLAPESIPSL 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,102
Number of Sequences: 27780
Number of extensions: 302460
Number of successful extensions: 1042
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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