Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1162
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.48 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.63 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 476 ELERNFSKNASESPPFIRINKNLSGSTENLLISNVRRSDEKIS 348
           E+E+  S+ +    P  R   N S +++ +++SN   S + IS
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKLESSDDIS 113


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 476 ELERNFSKNASESPPFIRINKNLSGSTENLLISNVRRSDEKIS 348
           E+E+  S+ +    P  R   N S +++ +++SN   S + IS
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKLESSDDIS 113


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 515 EADWNSNLGRNRVELERNFSKNASE 441
           EA W+  LGR    +ERN  + A +
Sbjct: 387 EAQWSRVLGRVHATIERNEKRLAEQ 411


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 548 QLRFVFASKEREADWNSNL 492
           +L + F+    E DWNSNL
Sbjct: 348 KLSYAFSVWRMEDDWNSNL 366


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 476 ELERNFSKNASESPPFIRINKNLSGSTENLLISNVRRSDEKIS 348
           E+E+  S+ +    P  R   + S +++ +++SN   S + IS
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSSTSNTSKTVILSNKLESSDDIS 113


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 476 ELERNFSKNASESPPFIRINKNLSGSTENLLISN 375
           E+E+  S+ +    P  R   N S +++ +++SN
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSN 104


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 479 VELERNFSKNASESPPF 429
           ++  R F KNA   PPF
Sbjct: 491 IQRNREFYKNADVRPPF 507


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 476 ELERNFSKNASESPPFIRINKNLSGSTENLLISN 375
           E+E+  S+ +    P  R   N S +++ +++SN
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSN 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 14/56 (25%), Positives = 20/56 (35%)
 Frame = -1

Query: 601  QYRQPRRDQRITQPYPEDSSDLSLQARNERQTGTPI*EXXXXXXXXXSARMLPKVP 434
            Q +Q ++ Q+  Q   +       QAR     G  I E          A  + KVP
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVP 1266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,599
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)