Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    30   0.25 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   1.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   7.2  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   7.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 520 EAELNSQFRKEPGLSSSGNFSKNASESPPFIRINIDLSGSDG 395
           E+E+  Q  +EP L S  +   N++   P   + +D+ G DG
Sbjct: 256 ESEIEGQHVEEPALPSETSVPANSTLQVPTENVEVDVLGKDG 297


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 119 LSRCKVNLCFRLKFQILFLCSCIVCFM 39
           LS  +++ CF L+F+IL+ CS IV F+
Sbjct: 681 LSAGQMDKCFYLEFEILY-CSAIVLFL 706


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 535 ASKEREAELNSQFRKEPGLSSSGNFSKNASESPPFIRINIDLSG-SDGESADFQCQKIRR 359
           AS  ++ ELNS    +   S+      ++SES   +  + DLS  SD  S D      R+
Sbjct: 241 ASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSSSGDESSDTARQ 300

Query: 358 ENKWVINSYYLPIDLKI 308
            +   I+S  + + + +
Sbjct: 301 SSSDTISSNNVSVSVSL 317


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 538 FASKERE--AELNSQFRKEPGLSSSGNFSKNASESPPFIRINIDLSGSDGESAD 383
           F++K+ +   +L S+      LSS G   ++ +E  PF+  N+  S  + +S D
Sbjct: 603 FSNKDYDFLIQLKSKVFNRFQLSSQGLTPEDLTEDVPFLHFNVPSSRPNSKSPD 656


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 172 GCNTSRSQTADSSYFDVIYRGARLICVSD*SFKFYFYVHA 53
           GCN   +    SS   +IY   RLI V+D  FK   Y+ A
Sbjct: 10  GCNRIPTAATWSSNLGLIYGAERLIAVAD-PFKEINYLMA 48


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -1

Query: 508  NSQF--RKEPGLSSSGNFSKNASESPPFIRINIDLSGSDGESADFQCQKIRRENKWVINS 335
            N QF  R E G ++S +   N + SP      +  + +D +  ++Q      E +W+   
Sbjct: 817  NGQFGTRSEGGKNASASRYLNTALSP---LARVLFNSNDDQLLNYQ----NDEGQWIEPE 869

Query: 334  YYLPIDLKILRKG 296
            YY+PI   +L  G
Sbjct: 870  YYVPILPMVLVNG 882


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 514 ELNSQFRKEPGLSSSGNFSK-----NASESPPFIRINIDLSGSDGESADFQCQKIRRENK 350
           E N + R+EPG+ +  +FSK         S  F  ++      D      Q  K+RR+++
Sbjct: 413 EWNLEQREEPGIETVLDFSKLRINDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQ 472

Query: 349 WVIN 338
           + I+
Sbjct: 473 FFIS 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,266
Number of Sequences: 5004
Number of extensions: 40703
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)