Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550     31   0.58 
11_06_0039 - 19512126-19512211,19514959-19516036                       29   3.1  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    28   5.4  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   9.5  

>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
          Length = 461

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 535 ASKEREAELNSQFRKEPGLSSSGNFSKNASESPPFIRINID 413
           A  E E+    Q    P  +S G  S++A + PP IR+N++
Sbjct: 314 ADAEVESSRTVQSSASPAANSPGAMSESAVDKPPVIRVNLE 354


>11_06_0039 - 19512126-19512211,19514959-19516036
          Length = 387

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 505 SQFRKEPGLSSSGNFSKNASESPPFIRINIDLSGSD 398
           S F  E   +   N+   ASE PPF+ +  D+  S+
Sbjct: 345 SNFDTEKDSNGDSNYDAAASEDPPFVEVEADVWESE 380


>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
            25549152-25549242,25549330-25549743,25550191-25550243,
            25550947-25551177,25551492-25551708,25551790-25551890,
            25552446-25552532,25553536-25553676,25553839-25553961,
            25554070-25554522,25554931-25555308,25555410-25556060,
            25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 375  HWKSADSPSEPLRSILILMKGGLSEAFLL 461
            HW+  DSP E L  +  L   G  EA+LL
Sbjct: 1173 HWEVIDSPQELLSLLASLDSRGTREAYLL 1201


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 475  SSGNFSKNASESPPFIRINIDLSGSDGESADFQCQKIRRENKWVINSYYLPIDLKILRKG 296
            +S   + + S+SPP     + L+G   E      QK+ + +K  + +  LP DLK L  G
Sbjct: 3505 TSDEAANSKSKSPPSTLGGMSLNGQTQEYR-LLLQKVLKAHKHPVTALCLPPDLKQLLSG 3563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,468,931
Number of Sequences: 37544
Number of extensions: 224241
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)