Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    29   2.8  

>Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical
           protein W02A2.7 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 509 ELPI*EGTRVELERELQQECFRKSPFHKNQYRSKRFGRRIC*FPMSEDPARK*VGYK 339
           ELPI E +++ L+         +   H +++R ++FGRR   FP+ E  +++   YK
Sbjct: 218 ELPIDEISKITLDNHNDDTMSAEKENHFHEHRGEKFGRR--GFPIPETDSQQPPNYK 272


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -1

Query: 217 SKFIILLKLFHPYVSGCNTSRSQTADSSYFDVIYRGARLICVSD*SFKFYFYVHALFVL* 38
           SKF    ++F  ++    T + +T  S+Y  ++Y G RL      SF   +Y++ LF + 
Sbjct: 337 SKFSKNDRVFEIFLINDETPK-KTVYSTYGQLLYTGKRLRSAVQLSFIPLYYIYLLFCMV 395

Query: 37  YKYILKM 17
            ++ +K+
Sbjct: 396 LQFTMKL 402


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 101 NLCFRLKFQILFLCSCIVCFMI 36
           NL  +  F ILF+ SCI CF +
Sbjct: 61  NLYLKQSFYILFIMSCIACFTL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,808
Number of Sequences: 27780
Number of extensions: 226362
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)