Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 349 WVINSYYLPIDLKILRKGYL 290
           W+ +  YLP  L+IL K +L
Sbjct: 803 WIAHDRYLPNSLRILLKRFL 822


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 478 SSSGNFSKNASESPPFIR-INIDLSGSDGESADFQCQKIRRENKWVI 341
           S +GN + +A +S P I  I++D SGS    A+++  +     +W +
Sbjct: 542 SGNGNTNSSARDSSPAIESISVD-SGSINTVAEWEPPRALWPTEWKV 587


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 89  RLKFQILFLCSCIVCFMI*IHIKNV 15
           R+ F + F+C  ++ ++I +HI +V
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHISDV 433


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 89  RLKFQILFLCSCIVCFMI*IHIKNV 15
           R+ F + F+C  ++ ++I +HI +V
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHISDV 433


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 427 RIN-IDLSGSDGESADFQCQKIRRENKWVINS 335
           RIN  DL     E+  F  + I  + KWV+N+
Sbjct: 8   RINSCDLLKKRNENDPFLKRPITGDEKWVVNN 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,904
Number of Sequences: 438
Number of extensions: 2762
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)