Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1150
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    29   0.40 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.53 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   2.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   4.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.6  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 218 RGGPVPNSPYSECITIHWPSFYNVVTGKTLALPNL-IALQHIPLSPAG----VIAKRPAP 382
           RGG V  +  +EC+ IH     NV+T      PN+  A   IP  P+G    V+A + A 
Sbjct: 193 RGGGVITTQ-AECMWIHLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKDAS 251

Query: 383 IAL 391
           I L
Sbjct: 252 IDL 254


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +2

Query: 227 PVPNSPYSECITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 391
           P+P  P    ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229

Query: 392 PNSCA 406
            +S A
Sbjct: 230 YSSDA 234


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 340 PPFASWRNSEEARTDRPSQQLRSLN 414
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 600 SPRSLIVDSCSKLEQHSTLSRSILLI 523
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 144 LNQQLDDFKTPASV-QCVYNPTKYARGGARYPIR 242
           L Q L+  +TP  V +  YNPTK+   G  Y IR
Sbjct: 493 LIQNLNSPRTPKIVGKMRYNPTKHCWEGNDYAIR 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,494
Number of Sequences: 5004
Number of extensions: 55839
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)