Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1150
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           32   0.41 
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   1.3  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   1.3  
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890...    29   2.2  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   2.9  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   5.1  
02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772...    28   5.1  
06_01_0092 - 775290-775691                                             28   6.7  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 251 ECITIHWPSFYNVV-TGKTLALPNLIALQH 337
           E I+  W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 462
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 462
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>01_06_1665 -
           38988014-38988078,38988459-38988546,38988921-38989082,
           38989268-38989359,38989896-38990007,38990040-38990181,
           38990448-38990668
          Length = 293

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = +3

Query: 141 ELNQQLDDFKTPASVQCVYNPTK-------YARGGARYPIRPIVSVLQFT 269
           E+  + D F T   +   YN TK       Y RGG +Y +  IVS ++F+
Sbjct: 168 EIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRGGRKYLVGHIVSAIEFS 217


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 248 SECITIHWPSFYNVV-TGKTLALPNLIALQH 337
           +E I   W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 251 ECITIHWPSFYNVV-TGKTLALPNLIALQH 337
           E I   W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


>02_05_0136 +
           26174965-26175849,26176965-26177030,26177124-26177258,
           26177369-26177434,26177516-26177701,26177777-26177863,
           26177985-26178098,26178174-26178298,26178375-26178483,
           26179298-26179423,26179511-26179831,26180146-26180269,
           26180405-26180529
          Length = 822

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 135 IDELNQQLDDFKTPASVQCVYNPTKYARGGARYPIRPIVSVLQFTGRRFTTS*LGKPWRY 314
           +DE  ++L++      V+ + NP +Y R GAR P   ++  L  TG+      +      
Sbjct: 351 VDEAKEELEEI-----VEFLRNPERYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV 405

Query: 315 PT*SPCSTSPFRQL 356
           P  S CS S F +L
Sbjct: 406 PFIS-CSASEFVEL 418


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 377 RASSLLRQLAKGGCAARR 324
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,578
Number of Sequences: 37544
Number of extensions: 369426
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)