Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1150
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47060.1 68416.m05110 FtsH protease, putative contains simila...    30   1.4  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   4.2  
At5g58870.1 68418.m07376 FtsH protease, putative contains simila...    28   5.6  
At1g27020.1 68414.m03294 expressed protein                             27   7.4  

>At3g47060.1 68416.m05110 FtsH protease, putative contains
           similarity to FtsH protease GI:13183728 from [Medicago
           sativa]
          Length = 802

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +3

Query: 135 IDELNQQLDDFKTPASVQCVYNPTKYARGGARYPIRPIVSVLQFTGRRFTTS*LGKPWRY 314
           +DE  ++L++      V+ + NP KY R GAR P   ++  L  TG+      +      
Sbjct: 330 VDEAKEELEEI-----VEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV 384

Query: 315 PT*SPCSTSPFRQL 356
           P  S CS S F +L
Sbjct: 385 PFIS-CSASEFVEL 397


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 588 LIVDSCSKLEQHSTLSRSILLIYKGFCDFGLLVKK*ADLTK 466
           L++  CSKL+   +L RS+L +  G C   +++K+  D++K
Sbjct: 833 LLLSDCSKLQSILSLPRSLLFLDVGKC---IMLKRTPDISK 870


>At5g58870.1 68418.m07376 FtsH protease, putative contains
           similarity to cell division protein FtsH homolog 3
           SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
           sp.}
          Length = 806

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 135 IDELNQQLDDFKTPASVQCVYNPTKYARGGARYPIRPIVSVLQFTGRRFTTS*LGKPWRY 314
           +DE  ++L++      V+ + NP +Y R GAR P   ++  L  TG+      +      
Sbjct: 334 VDEAKEELEEI-----VEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDV 388

Query: 315 PT*SPCSTSPFRQL 356
           P  S CS S F +L
Sbjct: 389 PFIS-CSASEFVEL 401


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 295 WENPGVTQLNRLAAHPPFASW 357
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,797
Number of Sequences: 28952
Number of extensions: 290531
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)