Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1147
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 8e-38
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37
SB_56| Best HMM Match : Actin (HMM E-Value=0) 152 2e-37
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 152 2e-37
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 7e-37
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 133 1e-31
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 2e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 45 4e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_54| Best HMM Match : Actin (HMM E-Value=0) 34 0.074
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.40
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 29 3.7
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) 29 3.7
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 6.4
SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 8.5
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 153 bits (372), Expect = 8e-38
Identities = 70/73 (95%), Positives = 73/73 (100%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
TTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 277 TTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 336
Query: 328 DESGPSIVHRKCF 290
DESGP+IVHRKCF
Sbjct: 337 DESGPAIVHRKCF 349
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTV+SGG
Sbjct: 252 TYNSIMKCDVDIRKDLYANTVMSGG 276
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 152 bits (369), Expect = 2e-37
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
TTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 266 TTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 325
Query: 328 DESGPSIVHRKCF 290
DESGP+IVHRKCF
Sbjct: 326 DESGPAIVHRKCF 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 241 TYNSIMKCDVDIRKDLYANTVLSGG 265
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 152 bits (369), Expect = 2e-37
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 304 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363
Query: 328 DESGPSIVHRKCF 290
DESGPSIVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGG 303
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 152 bits (369), Expect = 2e-37
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 328 DESGPSIVHRKCF 290
DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGG 302
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 152 bits (368), Expect = 2e-37
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 304 STMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363
Query: 328 DESGPSIVHRKCF 290
DESGPSIVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGG 303
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 150 bits (364), Expect = 7e-37
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 STMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 328 DESGPSIVHRKCF 290
DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 582 TYNSIMKCDVDIRKDLYANTVLSGG 508
TYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGG 302
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 133 bits (321), Expect = 1e-31
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = -2
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY
Sbjct: 77 STMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEY 136
Query: 328 DESGPSIVHRKCF 290
E GP IVHRKCF
Sbjct: 137 HEYGPPIVHRKCF 149
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 579 YNSIMKCDVDIRKDLYANTVLSGG 508
YN IMKCDVDIRKDLY+N VLSGG
Sbjct: 53 YNCIMKCDVDIRKDLYSNCVLSGG 76
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = -2
Query: 457 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 278
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 576 NSIMKCDVDIRKDLYANTVLSGG 508
N I C +D+R+ LY N VLSGG
Sbjct: 229 NVIQNCPIDVRRPLYKNIVLSGG 251
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = -2
Query: 541 GLVRQHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 371
GL + T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 370 L 368
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -2
Query: 439 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 317
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 579 YNSIMKCDVDIRKDLYANTVLSGG 508
+N+I D+D R + Y + VLSGG
Sbjct: 283 FNTIQAADIDTRSEFYKHIVLSGG 306
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 579 YNSIMKCDVDIRKDLYANTVLSG 511
+ SI KCD+D+R +L+ N VLSG
Sbjct: 2324 FKSIKKCDIDLRAELFHNIVLSG 2346
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 573 SIMKCDVDIRKDLYANTVLSGG 508
+I K D+D+R+ LY+N VLSGG
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGG 285
>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 336 KSTTSLAPPLYTGSASKRTARRCLQQPGPAAQFRL 232
K+T P++T S K+T R C++ P P + R+
Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Frame = -2
Query: 520 IVRWTTMYPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASL 368
++ T M PG R+ +EI L S +K+ PP + W+GG+I SL
Sbjct: 83 LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142
Query: 367 STFQQMWISKQEYDE 323
+++ Y +
Sbjct: 143 EVLADRSTTRERYQQ 157
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 408 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 289
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 366 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 256
L C SR K P Y G RT ++C +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 363 PSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPGPAAQ 241
P N+ G++ + +L P++TGS + R +P P+A+
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919
>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
Length = 1002
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 526 HRIVRWTTMYPGIADRMQKEI--TALAPSTMKIKIIAPPERKYSVWI 392
HRIVRW T+ +A + + T L P +I+II P Y V I
Sbjct: 826 HRIVRWVTLALFVALVVLATVFATKLKPDEEQIEIIGPGTNWYDVRI 872
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 390 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 277
VD+S P SLP+ K G + S P GS+ SK TA
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977
>SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 428 HCSSREEVLRMDRWIDPRLPLYLPTNVDLETRVRRVWPLHCTQEVLLNAPRVAASSSP 255
HC+ +E L+ W + LP+ + V+R + L Q+VL P +S+SP
Sbjct: 228 HCNFWDEKLKEGDWEPEEIASKLPSFLSFVRDVQRNFSLGDEQDVLERPPPRWSSNSP 285
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 393 SVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPGPAAQ 241
S D+ P +PS R S+ +APP S +K+ ++ P Q
Sbjct: 445 SKDKKGPSKVPSKDTRRRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQ 495
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = -3
Query: 408 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTG------SASKRTARRCLQQPGPA 247
S YG +S+P S+ +NK R + PPL +G ++ K A P
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISGIQAMCETSPKEQAIASANLPAVG 630
Query: 246 AQFRLVIS 223
F+L+++
Sbjct: 631 ETFQLIVT 638
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,474,935
Number of Sequences: 59808
Number of extensions: 399918
Number of successful extensions: 1220
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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