Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1146
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    43   0.006
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.077
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -3

Query: 688  SGRQRLGSAPGIAEVHGRR 632
            SGRQRLGSAPGIAEVHGRR
Sbjct: 968  SGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.5 bits (88), Expect = 0.077
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -1

Query: 642 MGDGNHSPSGGSYARMPTKAIKKI 571
           MGDGNHSPSG  YA +PT+A  K+
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKL 24


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 576 FLLPL*AYEHTTHLMVSGYRRPWTSAMPGAEPS-RCLPEL 692
           F +    +  T +L+   +R  WTS +PGA+P  RCL  L
Sbjct: 27  FQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCLVNL 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,052,369
Number of Sequences: 1657284
Number of extensions: 15497501
Number of successful extensions: 30676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30601
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)