Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1146
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    31   0.16 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   1.9  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   4.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   7.8  

>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 366 FSDS*IISYNLDHTKMSTDAGSWHLNRGRRPLLTYYNFSVRTQSLFTYIRCNYAKLLIIL 545
           F DS I SY      ++   G+W++NR   P+  Y+  +      +++  C    L ++ 
Sbjct: 33  FVDSVIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGHTGQWSF-SCRRLNLHLLN 91

Query: 546 SVILCDQIL 572
            +  CD ++
Sbjct: 92  EITTCDGLI 100


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +3

Query: 456 PLLTYYNFSVRTQSLFTYIRCNYAKLLIILSVILCDQILFF 578
           P+L +++F +   ++F+Y      +  +  +V++ D +L F
Sbjct: 316 PILRHFSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDLLLLF 356


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 220 QLRRTVVGIALLNKIPIGSAIVEINMQM*KTDSLSAIRSINNDE 351
           ++RR ++G+    K P G   VE        DSL  I   + DE
Sbjct: 57  EIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDE 100


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 15  LWVLFLVKVNHEHLLSTYFITKIGTRLRDSNTVA 116
           LW   +    HE    TY ITK G      N+VA
Sbjct: 223 LWQASVTSSTHERKSKTYVITKNGKLYLKHNSVA 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,577
Number of Sequences: 5004
Number of extensions: 66207
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)