Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1146
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0661 + 4968089-4969741                                           29   2.7  
09_02_0315 - 7179332-7179949                                           29   4.7  
10_08_0771 + 20463872-20465113                                         28   8.1  

>07_01_0661 + 4968089-4969741
          Length = 550

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 151 LGHNDLILCRHCP*TCSYPQPHVQLRRTVVGIALLNKIPIG 273
           L H  L+L R    T S P PHV L   +   A L+ +P G
Sbjct: 42  LAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEG 82


>09_02_0315 - 7179332-7179949
          Length = 205

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 685 GRQRLGSAPGIAEVHGRR*PLTIRWVVCSYAYKGN 581
           GR   G A  +AEV     P  + WV+CS+ Y+GN
Sbjct: 80  GRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGN 113


>10_08_0771 + 20463872-20465113
          Length = 413

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 196 CSYPQPHVQLRRTVVGIALLNKIPIGSAIVEI 291
           CSY  P  QLR    G A  +   IG+A V +
Sbjct: 135 CSYKGPPTQLRGNTSGFAATDTFAIGTATVRL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,241
Number of Sequences: 37544
Number of extensions: 423381
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)