Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1146
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39504| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00014) 30 1.6
SB_3788| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00073) 30 1.6
SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11) 30 1.6
SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40) 30 1.6
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 30 1.6
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.1
SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11) 30 2.1
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 29 3.6
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051) 28 6.3
SB_32348| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_32926| Best HMM Match : DUF310 (HMM E-Value=7.4) 28 8.3
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_39504| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00014)
Length = 217
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 118 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 150
>SB_3788| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00073)
Length = 298
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 134 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 166
>SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11)
Length = 476
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 335 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 367
>SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40)
Length = 1006
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 822 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 854
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 135 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 167
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D NAPD+ P+ P+
Sbjct: 335 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENPD 367
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRP 167
+ K+GT L +N + + D NAPD+ P+ P
Sbjct: 286 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENP 317
>SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11)
Length = 548
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRP 167
+ K+GT L +N + + D NAPD+ P+ P
Sbjct: 286 LLKMGTTLHKNNVILAGDFNAPDIDWVNPENP 317
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 395 IIRDDL*IRECSEFNSSLLILRMAESESVFYICMLISTMA-DPIGILFNRAIPTTV 231
I+RD+ + ++ ++ +I+ + ES+ Y C + S M+ P + N +P TV
Sbjct: 104 ILRDEGHVLVDADAEATFIIMNVRESDHARYRCSIESKMSLSPASVKLNVLVPATV 159
>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
Length = 575
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 72 ITKIGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+ K+GT L +N + + D +APD+ P+ P+
Sbjct: 282 LLKMGTTLHKNNVILAGDFDAPDIDWVNPENPD 314
>SB_32348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 81 IGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+GT L +N + + D NAPD+ P+ P+
Sbjct: 1 MGTTLHKNNVILAGDFNAPDIDWVNPENPD 30
>SB_32926| Best HMM Match : DUF310 (HMM E-Value=7.4)
Length = 316
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 81 IGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+GT L +N + + D NAPD+ P+ P+
Sbjct: 1 MGTTLHKNNVILAGDFNAPDIDWVNPENPD 30
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 81 IGTRLRDSNTVASLDTNAPDVLSFRPQRPN 170
+GT L +N + + D NAPD+ P+ P+
Sbjct: 1 MGTTLHKNNVILAGDFNAPDIDWVNPENPD 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,452,814
Number of Sequences: 59808
Number of extensions: 508992
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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