Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1146
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   9.0  
At2g01200.2 68415.m00032 auxin-responsive AUX/IAA family protein...    27   9.0  

>At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 719

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 364 HSRIHKSSLII*TTRKCQLTQVHGI*TGEGDHYSPIIISRCVHSRYLRIFGVIT 525
           HS    +SLI   T K QL Q+H      G  +S  +I++ +H+     FG IT
Sbjct: 19  HSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHAS--SSFGDIT 70


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 593 GIRAYDPPDGEWLP-SPMDFSNARGRA 670
           G + Y+P  GEW+  SP+D     GRA
Sbjct: 855 GTQVYNPERGEWMELSPLDVMQMIGRA 881


>At2g01200.2 68415.m00032 auxin-responsive AUX/IAA family protein
           contains Pfam profile: PF02309 AUX/IAA family
          Length = 191

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +3

Query: 387 SYNLDHTKMSTDAGSWHLNRGRRPLLTYYNFSVRTQSLFTYIRCNYAKLLIILSVILCDQ 566
           SYN      S D G   L +G      YYN    ++  + Y++ N   L++   V L DQ
Sbjct: 66  SYNSITQLKSEDTGHQRLAQG------YYNNEGESRGKYAYVKVNLDGLVVGRKVCLVDQ 119

Query: 567 ILFFLLPL*AYEHTTHLMVSGYR 635
             +  L L   +      VSG R
Sbjct: 120 GAYATLALQLNDMFGMQTVSGLR 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,121
Number of Sequences: 28952
Number of extensions: 343535
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)