Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1145
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.0  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 168 YWHL*YVFASAKFLRILHSLH 106
           +W+   ++A+A F+ + H LH
Sbjct: 284 FWYARLLYATADFVLLSHLLH 304


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 481 DTGIRDAGMPRQCARRKSLTLTFGEFCVFAAELR 582
           + G+R  G+PR+  +    +L  G    +  EL+
Sbjct: 25  EKGLRKQGVPREATKITLSSLAKGSLKQYTCELK 58


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 408 PTRHSQALATSLAKVPFNL 352
           PT H     TS+ K+PF++
Sbjct: 640 PTFHLTVRNTSIIKIPFDV 658


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,408
Number of Sequences: 336
Number of extensions: 3100
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)