Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1145
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.39 
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    29   0.39 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   2.1  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   2.1  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    25   6.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.4  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
 Frame = +2

Query: 242 GIRYGPAPPCVAATFEQSDPP----RDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVG 409
           G R+GP  PC++     S  P    ++I+ +      N  +KL G+     + +    + 
Sbjct: 512 GSRHGPREPCLSPDASSSSIPVTDIKEILPSQHDTPHNS-VKLTGSSTTPASVSLRQMIE 570

Query: 410 P--PDHPASADRIQSLFNDIELYPTKTQVFEMLVCHDSVRVANRSLSHSENSACLQLS 577
           P     P   +   SL +D        +V   L  HD    +  S +  + S C QLS
Sbjct: 571 PLLSRTPPKGEFTNSL-DDTPTQSNVEKVDRFLENHDWETCSESSSASEDQSLCKQLS 627


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 305 RDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGP 412
           RDI++AH        I + G  A  + S WE +VGP
Sbjct: 174 RDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGP 209


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 109 QRVQYAQELCRSKD-VLQMPVRRVTPDITRIRASRLLSERQSRVAWNPLWSSAAVCRRDV 285
           Q  + A++L  +KD VL+ P  R   D T     R L +    V   P W   A C+ + 
Sbjct: 421 QYAEKAKDLINTKDTVLKDPWLRQL-DWTPCNLYRKLKKATQEVPVVPKWYKKAYCKTEK 479

Query: 286 RAV 294
           RAV
Sbjct: 480 RAV 482


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 268 VCRRDVRA-VGSTSGHHRCSQ 327
           +C++D R+ + +T GHH C Q
Sbjct: 256 ICKKDYRSPIATTCGHHFCEQ 276


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 NDQIERHFGKGGCERLGVPRGASRSSSICRSHPEPIQRHRIVSH 477
           ND   R+   GG +   VP   SR +  C S+   I+R R+ +H
Sbjct: 121 NDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRR-RLTAH 163


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 245 IRYGPAPPCVAATFEQSDPPRDIIDAHKSNKQN 343
           +++ P PP V ++   S PP  +  A+ S   N
Sbjct: 740 VKHHPPPPPVRSSISPSMPPAPLTHANSSTPMN 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,203
Number of Sequences: 5004
Number of extensions: 50296
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)