Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1145
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50547| Best HMM Match : ATP-synt_8 (HMM E-Value=2.2)                31   0.71 
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_50547| Best HMM Match : ATP-synt_8 (HMM E-Value=2.2)
          Length = 150

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 296 DPPRDIIDAHKSNKQNGMIKLKGTLAREVAS 388
           DP R  +DA K+ KQN  + LK +L + V S
Sbjct: 100 DPTRSRVDARKAAKQNWQVALKVSLKKRVTS 130


>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGP 412
           GP  P            R+I++AH        +K+ GT A  + + WE +VGP
Sbjct: 159 GPQGPYYCGVGTNKVFGREIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQVGP 211


>SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 433 RSHPEPIQRHRIVSH*DTGIRDAGMPRQCARRKSL 537
           R  PE I  H  VS     I D  MP+ CA +K L
Sbjct: 35  RGRPEIIAFHNSVSDHSAIICDVDMPKPCASKKIL 69


>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 175 VTPDITRIRASRLLSERQSRVAWNPLWSSA 264
           V  D+TR + + L S R+  + W P W SA
Sbjct: 17  VIDDVTRSK-NMLTSSRKGNIIWQPNWGSA 45


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 DRIQSLFNDIELYPTKTQVFEMLV 505
           D+++   N++E+Y TK  + +MLV
Sbjct: 97  DKLEEWLNEVEMYSTKKDIVKMLV 120


>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 483 VLVGYNSMSLNRLWMRSADAG*SGGPTRHSQALATSLAKVPFNLI 349
           +++GYN M +   ++R+      G P  H+ +  T+    PF ++
Sbjct: 133 IIIGYNVMDIATTFIRAFWLEYCGSPVVHASSHGTNTKITPFEIV 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,601,740
Number of Sequences: 59808
Number of extensions: 454813
Number of successful extensions: 1291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)