Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1145
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    31   0.48 
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    31   0.48 
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    29   1.9  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
           GP  P            RDI++AH        I++ GT A  +   WE +VGP +     
Sbjct: 158 GPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMG 217

Query: 434 DRI 442
           D++
Sbjct: 218 DQL 220


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
           GP  P            RDI++AH        I++ GT A  +   WE +VGP +     
Sbjct: 161 GPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMG 220

Query: 434 DRI 442
           D++
Sbjct: 221 DQL 223


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 217 SERQSRVAWNPLWSSAAV-CRRDVRAVGSTSGHHRCSQVE*AKWNDQIERHFGK 375
           S+ Q R  W P      V   R +  +G T  H R +Q+      ++I +HFGK
Sbjct: 139 SDHQDRSIWEPKCPYKVVPSSRPIVLLGPTLQHSRLTQLLHLALREEILKHFGK 192


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 523 AHTVVAYQHLEYLCLSGIQFDVVE*ALDAIGRCWMIGRPHAAL 395
           A  +  Y++   +C+ G++ D+V    D    CW+    HA L
Sbjct: 267 ADEIQDYENTVSICIGGVECDLVFFESDMSDPCWLTNEIHAFL 309


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 27  NLKGVEMEGAILSVSGNNSRFRTH 98
           NLKG E  GA+L +SG N +  T+
Sbjct: 660 NLKGNENSGAVLKISGENVKIVTN 683


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 596 CFEHRRSSAANTQNSPNVRVSDLR 525
           CFE+R  +  N Q+ P ++ +D+R
Sbjct: 104 CFENRVEACVNDQHGPQIQKTDIR 127


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 596 CFEHRRSSAANTQNSPNVRVSDLR 525
           CFE+R  +  N Q+ P ++ +D+R
Sbjct: 104 CFENRVEACVNDQHGPQIQKTDIR 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,248
Number of Sequences: 27780
Number of extensions: 321393
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)