Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1145
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.2  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 41  RNGGCDLKCVW*QQQVQD 94
           RN GC L C+W Q  V +
Sbjct: 66  RNYGCFLACIWQQTGVMN 83


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 500
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 500
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 500
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 500
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 302 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 331


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 75  YQTHLRSH 52
           YQ+HLRSH
Sbjct: 77  YQSHLRSH 84


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 9  YSSECANLKGVEMEGAILSVSGNNS 83
          YS+ C+N +     G+ +S + N S
Sbjct: 17 YSNTCSNSQSQRSSGSSISRNSNRS 41


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 9  YSSECANLKGVEMEGAILSVSGNNS 83
          YS+ C+N +     G+ +S + N S
Sbjct: 17 YSNTCSNSQSQRSSGSSISRNSNRS 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,151
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)