Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1145
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07... 35 0.047
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 33 0.11
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 33 0.11
At3g49490.1 68416.m05409 expressed protein 32 0.25
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 32 0.25
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 30 1.0
At5g56420.2 68418.m07043 F-box family protein contains F-box dom... 25 1.7
At5g56420.1 68418.m07042 F-box family protein contains F-box dom... 25 1.7
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 29 1.8
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to... 29 3.1
At2g27930.1 68415.m03385 zinc-binding family protein similar to ... 28 5.4
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 27 7.2
At5g13655.1 68418.m01588 hypothetical protein 27 9.5
>At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07881
AT.I.24-9 gene product from [Arabidopsis thaliana] (Mol.
Gen. Genet. 219 (1-2), 106-112 (1989))
Length = 1081
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 245 IRYGPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHP 424
+R P PPC A + R+I AH+SN++ M L ++ + G HP
Sbjct: 322 LRDHPPPPCDGANLDLGLSLREICAAHRSNEKQQMRALLRSVGPSFCPSDVEWFGDESHP 381
Query: 425 ASADR 439
SAD+
Sbjct: 382 KSADK 386
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
GP P RDI+D+H I + GT + WE +VGP A+A
Sbjct: 152 GPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAA 211
Query: 434 DRI 442
D++
Sbjct: 212 DQV 214
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
GP P + RDI+DAH I + G + WE +VGP ++A
Sbjct: 152 GPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAA 211
Query: 434 DRI 442
D I
Sbjct: 212 DEI 214
>At3g49490.1 68416.m05409 expressed protein
Length = 953
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 410 PPDHPASADRIQSLFNDIELYPTKTQVFE-MLVCHDS 517
PP HPASA Q N +E Y +VF+ M++ HDS
Sbjct: 27 PPHHPASAPPFQQ-SNPVESYDPAKEVFDPMMLYHDS 62
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
GP P RDI+DAH I + G + WE +VGP + +S
Sbjct: 152 GPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSG 211
Query: 434 DRI 442
D++
Sbjct: 212 DQV 214
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGPPDHPASA 433
GP P RD++D+H I + G + WE +VGP ++A
Sbjct: 152 GPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAA 211
Query: 434 DRI 442
D I
Sbjct: 212 DEI 214
>At5g56420.2 68418.m07043 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 560 QNSPNVRVSDLRRAHCRGIPASR 492
++SP +RV LR+ H R P+ R
Sbjct: 318 EDSPKLRVLKLRQKHIRRAPSPR 340
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 416 REAPRGTPKRSQPPLPKCL 360
R AP QP LPKCL
Sbjct: 334 RRAPSPRASWKQPALPKCL 352
>At5g56420.1 68418.m07042 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 560 QNSPNVRVSDLRRAHCRGIPASR 492
++SP +RV LR+ H R P+ R
Sbjct: 318 EDSPKLRVLKLRQKHIRRAPSPR 340
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 416 REAPRGTPKRSQPPLPKCL 360
R AP QP LPKCL
Sbjct: 334 RRAPSPRASWKQPALPKCL 352
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 229 SRVAWNPLWSSAAVCRRDVRAVGSTSGHHR 318
S WNP W++ A + A S SGH R
Sbjct: 26 SSTTWNPTWTNRAAAEAETVASFSCSGHGR 55
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
glutamine synthetase, chloroplast precursor (glutamate--
ammonia ligase, GS2) [Arabidopsis thaliana]
SWISS-PROT:Q43127
Length = 430
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +2
Query: 254 GPAPPCVAATFEQSDPPRDIIDAHKSNKQNGMIKLKGTLAREVASAWECRVGP 412
GP P RDI DAH I + GT + WE +VGP
Sbjct: 210 GPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGP 262
>At2g27930.1 68415.m03385 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 135
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 373 CQSAFQFDHSILLIRLVSIDDVPR 302
C+S+F DH +L IR S DV R
Sbjct: 46 CRSSFHIDHPVLQIRRSSYHDVVR 69
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 364 HFGKGGCERLGVPRGASRSSSICRSH 441
H G C++LG +GA ++ C++H
Sbjct: 235 HGGGQRCQKLGCNKGAESKTTFCKAH 260
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = +1
Query: 367 FGKGGCERLGVPRGASRSSSIC----RSHPEPI 453
FG+ GC +G+P+ ++ SS+I R H +P+
Sbjct: 140 FGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPL 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,670
Number of Sequences: 28952
Number of extensions: 293361
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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