Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1144
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CVK1 Cluster: Predicted membrane associated protein, ...    36   0.68 
UniRef50_A4LBC2 Cluster: Histone methyltransferase-like protein ...    36   0.68 
UniRef50_Q05FV7 Cluster: Putative ABC transporter ATP-binding co...    33   6.3  

>UniRef50_Q5CVK1 Cluster: Predicted membrane associated protein,
            signal peptide, transmembrane domain near C; n=2;
            Cryptosporidium|Rep: Predicted membrane associated
            protein, signal peptide, transmembrane domain near C -
            Cryptosporidium parvum Iowa II
          Length = 2123

 Score = 36.3 bits (80), Expect = 0.68
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = -2

Query: 587  FSTIVTNTSTPRQQKMSDRLQSTPVPQFIYL-PTHIF*NLSQSKH*VMILF*DLKK-DLE 414
            FST      +  Q K+S  L +  +PQ+I+L P+++  +L+ ++    +LF DLKK    
Sbjct: 1596 FSTYADAWFSSVQSKLSSALSTNTLPQYIHLPPSNVVLSLNSNEFETDLLF-DLKKISPG 1654

Query: 413  RTMILLRLIYRNLIKRNSHTTH*DLRYHQNLQQFKK 306
            + +++  L Y  L+  +  T + +  Y QN +  K+
Sbjct: 1655 QALLIADLYYNPLLVSSKLTLYSEPDYSQNDENDKE 1690


>UniRef50_A4LBC2 Cluster: Histone methyltransferase-like protein 1,
            isoform a; n=4; Caenorhabditis elegans|Rep: Histone
            methyltransferase-like protein 1, isoform a -
            Caenorhabditis elegans
          Length = 1604

 Score = 36.3 bits (80), Expect = 0.68
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 416  ERTMILLRLIYRNLIKRNSHTTH*DLRYHQNLQQFKKNYLK 294
            ++T  L++LIYR + KR S  +  D R+ +N  +  KNY+K
Sbjct: 1545 DKTTWLIKLIYREIFKRESAQSGFDYRFSENTDKKVKNYVK 1585


>UniRef50_Q05FV7 Cluster: Putative ABC transporter ATP-binding
           component; n=1; Candidatus Carsonella ruddii PV|Rep:
           Putative ABC transporter ATP-binding component -
           Carsonella ruddii (strain PV)
          Length = 221

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 452 VMILF*DLKKDLERTMILLRLIYRNLIKRNSHTTH*DLRYHQNLQQFK--KNYLKETKKT 279
           ++IL  ++   L++T +L+   Y NLIK+N +     + +++N+  F     YLK  K  
Sbjct: 157 ILILLDEIDSGLDQTSVLIIFNYLNLIKKNKYIIL--ISHNKNINNFLLIDFYLKIKKNK 214

Query: 278 LTSVKC 261
           +  +KC
Sbjct: 215 INILKC 220


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,882,104
Number of Sequences: 1657284
Number of extensions: 9498110
Number of successful extensions: 28400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28387
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)