Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1144
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    29   0.46 
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   7.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   7.6  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   10.0 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   10.0 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   10.0 

>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 69  SSWVLLLVNDITEFPSSAV*LLGKYSEGILL 161
           +SWVL L +DI E PS+ +  L +++E +L+
Sbjct: 180 TSWVLWLDSDIVETPSTLIQDLAEHNEDVLV 210


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 614 LVPKLQHHVFSTIVTNTSTPRQQKM-SDRLQSTPVP 510
           ++P+       +IV  TS+P   KM    L S+P P
Sbjct: 247 IIPRTPQKTVRSIVKQTSSPHSSKMPKHSLPSSPTP 282


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 435 RSEKRSRENDDTTATDLSKSDKKKQPYDSLRSQVPPE 325
           + +K+S+ENDD    D  K+ KK++    L S +  E
Sbjct: 179 KKKKKSKENDDAPKKD-RKTRKKEEKARKLASMLESE 214


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 121 ADDGNSVMSLTNKRTHDEMCNEPENLALSTTDLNPAKKKK 2
           ADD    M++    +H E  ++ E     + D+NP K +K
Sbjct: 48  ADDTIDKMNVGPHPSHSENASDSETTLEVSPDINPKKNEK 87


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 109  NSVMSLTNKRTHDEMCNEPENLALSTTDLNPAKKK 5
            N+ +  +NKR  D+   E E + +      PAK+K
Sbjct: 1118 NNRVKFSNKRVRDDYDEEMEEVEVPEVTRKPAKQK 1152


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 453 SYDSLLRSEKRSRENDDTTATDLSKSDKKK 364
           S+DSLL S K + E     ++   K DK++
Sbjct: 54  SFDSLLSSIKETMEEKKKKSSSFEKRDKRR 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,163
Number of Sequences: 5004
Number of extensions: 43922
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)