Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1144
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581...    28   7.8  

>05_06_0046 -
           25157093-25157431,25157810-25157928,25158024-25158189,
           25158289-25158415,25158490-25158590,25158719-25158905,
           25159000-25159100,25159220-25160194,25160325-25160423,
           25160500-25160972,25161307-25161420,25161830-25161900,
           25162015-25162086,25162334-25162377
          Length = 995

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 139 LPRSHTADDGNSVMSLTNKRTHDEMCNEPENL-ALSTTDLNP 17
           +P+ HT   G+     +N R H ++C E E    L  T + P
Sbjct: 497 IPQLHTLTKGSIQRKSSNARRHSKVCGEQEGKNKLENTTMTP 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,241
Number of Sequences: 37544
Number of extensions: 247043
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)