Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1144
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         30   2.0  
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)                  29   3.4  
SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)                   29   3.4  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_52671| Best HMM Match : SPAN-X (HMM E-Value=2.6)                    28   6.0  
SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)                     28   7.9  
SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)                   28   7.9  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -1

Query: 432 SEKRSRENDDTTATDLSKSDKKKQPYDSLRSQVPPEFAAVQEXXXXXXXXXXXXXKMLLD 253
           SE  S E ++  A D+ K D +K+P      + PP+  A  E              M LD
Sbjct: 109 SESESEEEEEEAAKDIKKPDVQKRPLAVNSDKSPPKKVAKVEKDSDSDEEESEEEGMELD 168

Query: 252 K 250
           K
Sbjct: 169 K 169


>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 160 NKIPSEYLPRSHTADDGNSVMSLTNKRTHDEMCNEPENLALSTTDLNPAKKKK 2
           +K+ +  +PR  + D  N    + + +T+   C +PEN +    + NP +  K
Sbjct: 298 DKVVAFSIPRQQSQDSSNHDNLVAHVQTYILDCKDPENYSFEDAENNPFEDPK 350


>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
          Length = 927

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 483 ILESLSKQTLSYDSLLRSEKRSRENDDTTATDLSKSDKKKQPYDSLRSQV 334
           +L  +S+ +L    +   +KR   ND T   + S+   K + Y +LR+++
Sbjct: 87  VLAEMSEPSLKLTPIKSPQKRPHSNDPTVKGEPSEKRPKTREYKTLRNRI 136


>SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)
          Length = 663

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 483 ILESLSKQTLSYDSLLRSEKRSRENDDTTATDLSKSDKKKQPYDSLRSQV 334
           +L  +S+ +L    +   +KR   ND T   + S+   K + Y +LR+++
Sbjct: 15  VLAEMSEPSLKLTPIKSPQKRPHSNDPTVKGEPSEKRPKTREYKTLRNRI 64


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 88 NKRTHDEMCNEPENLALSTTDLNPAKKKK 2
          N+ ++DE CNEP+  + STT+++   K +
Sbjct: 4  NEESNDENCNEPKQTSGSTTNVDVNSKSE 32


>SB_52671| Best HMM Match : SPAN-X (HMM E-Value=2.6)
          Length = 172

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 420 SRENDDTTATDLSKSDKKKQPYDSLRSQVPPE 325
           +R+N  ++ TD SK  KKK+  DS +S V  E
Sbjct: 5   ARKNSTSSPTDKSKRSKKKKKKDSSKSCVRKE 36


>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
          Length = 584

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 178 DVYDKINKIPSEYLPRSHTADDG 110
           ++ DK++  P +YLP +HT  +G
Sbjct: 528 EISDKLDNNPYDYLPSAHTCSNG 550


>SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)
          Length = 335

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 383 RNLIKRNSHTTH*DLRYHQNLQQFKKNYLKETKKTLTSVKCCWTNGFWGFECKSC 219
           RNL+++ S  ++ ++R   +LQ+  K +LKE          CW   F+G+E   C
Sbjct: 284 RNLVEQQSVDSYKEIRNITDLQRAYKLFLKE----------CWQLSFYGWESGFC 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,782
Number of Sequences: 59808
Number of extensions: 307058
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)