Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1144
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta...    29   3.8  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At5g53440.1 68418.m06641 expressed protein                             28   6.6  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    28   6.6  
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    28   6.6  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    27   8.7  
At4g03150.1 68417.m00428 expressed protein                             27   8.7  
At2g22840.1 68415.m02712 expressed protein identical to transcri...    27   8.7  

>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 673

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 453 SYDSLLRSEKRSRENDDTTATDLSKSDKKKQPYDSLRSQ 337
           S DS   SE     N+DTTA   S S+  +QP  S+RS+
Sbjct: 303 SSDSESSSESEDDVNNDTTAAQDSGSNGGEQPRRSVRSK 341


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 666 PGSRKYFCRVLATVRARTSTKTTAPRFFYNSYKYEHSTSAKNE 538
           P S K  CR  +    RTS  +++P+FF N    + S+S+ ++
Sbjct: 77  PTSPKLHCRTTSNATPRTS-NSSSPKFFSNPSSPKSSSSSSSQ 118


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 429 EKRSRENDDTT---ATDLSKSDKKKQPYDSLRSQVPPEFAA 316
           EK+S+E   TT   + +    DK+K+ YDS+  +   E+ +
Sbjct: 30  EKKSKEESSTTVRVSKESGSGDKRKEYYDSVNGEYYEEYTS 70


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 429 EKRSRENDDTTATDLSKSDKK--KQPYDSLRSQVPPE 325
           EK S + DD T+T  + +DKK  K+P D    +V  E
Sbjct: 861 EKNSSQQDDETSTHRNPNDKKGIKEPEDEESKKVERE 897


>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/63 (20%), Positives = 34/63 (53%)
 Frame = +3

Query: 408 RSLEIFFQILKENHNLMFALREILKYMGRKVNELRNWSRLKAITHFLLTWSARICNYCRK 587
           + ++ FF      ++ +  LR+++    R+  +L +     ++ ++  T+S +IC  CR+
Sbjct: 197 QGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYTYSVKICPVCRE 256

Query: 588 NVV 596
           ++V
Sbjct: 257 DLV 259


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -1

Query: 492 DPYILESLSKQTLSYDSLLRSEKRSRENDDTTATDLSKSDKKKQPY 355
           D   L SL K+    DS++   +RS EN +T AT  SK ++KK  Y
Sbjct: 499 DSTSLASLRKKVRFDDSVV---ERSTENGET-ATQTSKRERKKSKY 540


>At4g03150.1 68417.m00428 expressed protein
          Length = 185

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 154 IPSEYLPRSHTADDGNSVMSLTNKRTHDEMCNEPENLALS 35
           IP E+L  S   ++   +    +K   DE C EP N+ +S
Sbjct: 85  IPEEWLLPSRAIEESEWLRVTLHKWLDDEYCPEPTNVEIS 124


>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 106 SVMSLTNKRTHDEMCNEPENLALSTTD--LNPAKKK 5
           + M+L +K TH +  N P    L ++D  LNP+ K+
Sbjct: 317 ATMNLQSKETHPKQSNNPFEFGLISSDSLLNPSHKQ 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,696
Number of Sequences: 28952
Number of extensions: 219102
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)