Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1143
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2YTA8 Cluster: Putative uncharacterized protein; n=5; ...    33   5.6  
UniRef50_Q22E41 Cluster: Neurohypophysial hormones, N-terminal D...    33   7.4  
UniRef50_Q0M0I9 Cluster: TspO/MBR-related protein precursor; n=1...    32   9.8  
UniRef50_O75093 Cluster: Slit homolog 1 protein precursor; n=144...    32   9.8  

>UniRef50_A2YTA8 Cluster: Putative uncharacterized protein; n=5;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 151

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 318 RDVTGPYRASECKFL*FQSKPALYVVYQG-LYTWSPRSTARHAQSDALVKLVQYKGWSTR 494
           R +TG Y +++CKF  +Q   A++++ +G L+ W+  +   H   D + + V+       
Sbjct: 56  RCLTGQYTSAQCKFFMWQGDYAIWLMKEGFLHGWTDCNA--HRTEDDVPESVKASLKGLH 113

Query: 495 GGYTRLSCYMH*LYSPISIFG 557
            G  ++ C      S I +FG
Sbjct: 114 DGIEKIRCETKEAMSRICMFG 134


>UniRef50_Q22E41 Cluster: Neurohypophysial hormones, N-terminal Domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: Neurohypophysial hormones, N-terminal Domain
            containing protein - Tetrahymena thermophila SB210
          Length = 6552

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 219  EKAKCVQCLLTLSVSPSKKFTFGCSVGSCDVTSVREMVRC 100
            ++ KC QC L   +SPSK     C V +C +  +   + C
Sbjct: 2069 DQNKCQQCQLGYDLSPSKSCVSQCQVQNCQICVIGNPLEC 2108


>UniRef50_Q0M0I9 Cluster: TspO/MBR-related protein precursor; n=1;
           Caulobacter sp. K31|Rep: TspO/MBR-related protein
           precursor - Caulobacter sp. K31
          Length = 166

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 582 VTNSRLD*TRIWI*GYKASAYNS*VSYNLPVWTSLYIVLV*QEHRIVRAE 433
           VT S +D    W  G    A+N   +   PVWT+LY+V+     R+ RAE
Sbjct: 34  VTASSVD---TWYAGLNKPAFNPPNAVFAPVWTTLYVVMALAAWRVWRAE 80


>UniRef50_O75093 Cluster: Slit homolog 1 protein precursor; n=144;
            Coelomata|Rep: Slit homolog 1 protein precursor - Homo
            sapiens (Human)
          Length = 1534

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 380  GFRLKSKKFTFRCSVGSCDVTNVRERCRDACSL 282
            G RLK +KFTF CS G+     V +  +  C+L
Sbjct: 1500 GLRLKRRKFTFECSDGTSFAEEVEKPTKCGCAL 1532


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,851,039
Number of Sequences: 1657284
Number of extensions: 12498506
Number of successful extensions: 28621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28611
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)