Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1143
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.0  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 328 VTSRTCERDAEMRALSLSKKFTFRCR*GLVTSRTCEREGEMRAVLAHSLCLSLK 167
           +TS +   +  +  +S+ K  T+     L++S +   E   R V+ +SLC SLK
Sbjct: 442 ITSFSAVAEVSLSQISIKKLVTW-----LMSSESIMSENSNRFVVYYSLCKSLK 490


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
 Frame = +1

Query: 196 ALHAFRLLFRTFVTSQDPTDIGM*---ISLREREHASRHLSRTF----VTSQDPTEHLNV 354
           +L AFR + RT +TS+    I M    I L   E  +     +F    +   D  +   V
Sbjct: 208 SLDAFRNVIRTALTSRGAFSIIMVLTEIQLNNLEGINSQDRNSFNSVQIMGNDLLQDPRV 267

Query: 355 NFFDFNRNPLCMLYIRACTRGVHGPQLGTHNPMLLSN*YNIKAGPHGEV 501
               FN  P+   Y++ C   +   +    +P LLS   NI +   G++
Sbjct: 268 TVLQFN--PIAPTYMKKCLGSILRKEGVPKSPKLLSLVENICSASEGDL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,909
Number of Sequences: 5004
Number of extensions: 54109
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)