Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1143
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0751 + 19927164-19927835,19927926-19928663                       30   1.3  
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365...    29   4.0  
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     28   7.0  

>09_04_0751 + 19927164-19927835,19927926-19928663
          Length = 469

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 369 QSKPALYVVYQGLYTWSPRSTARHAQSDA 455
           Q +P   VVY    +W+PR  ARH  + A
Sbjct: 108 QGRPVDAVVYDSFLSWAPRVAARHGAATA 136


>05_06_0126 -
           25834129-25834214,25834595-25834658,25836201-25836521,
           25836912-25837040,25837118-25837177,25837251-25837548,
           25837622-25837776,25837959-25838097,25838185-25838266,
           25838337-25838455,25838537-25838664,25838810-25838983,
           25839052-25839203,25839393-25839425,25840362-25841331,
           25841412-25841537
          Length = 1011

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 448 DCACRAVDRGLHVYRP 401
           DC CR  +RGLHV  P
Sbjct: 295 DCVCRTCNRGLHVKHP 310


>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 310 ERDAEMRALSLSKKFTFRCR*GLVTSRTCEREGEMRAVLA 191
           +R  E+++LSLS  F+ R    L+  +  E E ++RAV A
Sbjct: 39  KRVRELQSLSLSTAFSLRLTVSLLLLQVAELEEQVRAVTA 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,709
Number of Sequences: 37544
Number of extensions: 344126
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)