Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1143
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22680.1 68414.m02834 hypothetical protein                          31   0.63 
At3g45830.1 68416.m04960 expressed protein                             30   1.1  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    29   1.9  
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    29   1.9  
At2g45200.1 68415.m05628 Golgi SNARE 12 protein / Golgi SNAP rec...    27   7.7  

>At1g22680.1 68414.m02834 hypothetical protein
          Length = 185

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 332 SCDVTNVRERCRDACSLSLKEIYIPMSVGSCDVTNVRKRRR 210
           S  + N+   CR AC +S   +Y+P S+ S D  ++  R R
Sbjct: 142 SIGLLNLYSSCRRACEVSESIVYLPKSIASYDHLHLSTRGR 182


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 130 RHKRARDGEMHRTHALLLSLSQRNLHSDYAR*SCEVTNVR 11
           +HK +RDGE    H +    S R  HS+Y++ S    N++
Sbjct: 362 KHKSSRDGEPISEHFMGPPYSSRQYHSNYSKSSRYANNIQ 401


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 484 GPHGEVIRDSAVICTSFIALYPYSGLIETRIRDKQTGCFY 603
           G HGE+++D      SF     +SGL+E  I  ++   FY
Sbjct: 262 GKHGEILKD----VKSFAETVSFSGLLELEILKRKVSAFY 297


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
           region
          Length = 1088

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 186 LSVSPSKKFTFGCSVGSCDVTSVREMVRCTG 94
           +S  P   F +GCS+ SC  T  + +  C G
Sbjct: 757 MSTYPLDSFEYGCSILSCSFTEDKNVYYCVG 787


>At2g45200.1 68415.m05628 Golgi SNARE 12 protein / Golgi SNAP
           receptor complex member 1 identical to Probable 28 kDa
           Golgi SNARE protein (Golgi SNAP receptor complex member
           1) (SP:O22151) {Arabidopsis thaliana}
          Length = 239

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 279 RERARISASLSHVRDVTGPYRAS 347
           RERA I  S+SH+ DV G  +A+
Sbjct: 153 RERASIHGSISHIDDVIGQAQAT 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,238
Number of Sequences: 28952
Number of extensions: 284872
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)