Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9CP39 Cluster: DcaA; n=5; Proteobacteria|Rep: DcaA - P...    32   4.0  
UniRef50_Q17DB6 Cluster: Zinc finger protein; n=3; Culicidae|Rep...    32   5.2  
UniRef50_A5ZMG8 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  

>UniRef50_Q9CP39 Cluster: DcaA; n=5; Proteobacteria|Rep: DcaA -
           Pasteurella multocida
          Length = 528

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 99  KEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWL 230
           KE+ +  H G H L  LA  + WG + I    S  R  +  HW+
Sbjct: 92  KEYWEVTHAGLHMLDKLAGGIIWGALDILIFISISRFRQKTHWV 135


>UniRef50_Q17DB6 Cluster: Zinc finger protein; n=3; Culicidae|Rep:
           Zinc finger protein - Aedes aegypti (Yellowfever
           mosquito)
          Length = 1020

 Score = 31.9 bits (69), Expect = 5.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 160 YNGEIFPYQ-QLAPNDGQVEAVTGYSANIIHRD 255
           +NG+   Y+ QL PNDG V +  GY +N  H D
Sbjct: 307 HNGKEAHYEHQLTPNDGSVRSDEGYHSNGYHED 339


>UniRef50_A5ZMG8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 409

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 70  YLTVKMKTLLKSIWILLILEVIDYIRWQEGYNGEIF 177
           Y+ V      +SIW LL+L ++    W++ + GEIF
Sbjct: 194 YIQVHPLFFYESIWCLLLLLILLLYTWRKKFEGEIF 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,146,549
Number of Sequences: 1657284
Number of extensions: 6797267
Number of successful extensions: 17246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17242
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)