Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    28   0.49 
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   0.65 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    28   0.65 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   3.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   8.0  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    24   8.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    24   8.0  

>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 92  LY*RAYGYCSFWKSSITSAGKKVTMGKYFHTNNWLQTTDKSKLSLV 229
           LY    G+  F+  SI+   KKV+ G+Y   + W     KS   L+
Sbjct: 353 LYTILCGFPPFYDESISLLTKKVSRGEYSFLSPWWDDISKSAKDLI 398


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 54  TKCFVIFNR*NE-NSIKEHMDTAHFGSHRLHPLARRLQ 164
           TK F+  N  NE  S    +++   G  RLHPLA RL+
Sbjct: 129 TKDFIKLNEVNEFPSSDTSLESNQDGFERLHPLAERLE 166


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 109 WILLILEVIDYIRWQEGYNGE 171
           +++  LEVIDY+R  EG++G+
Sbjct: 404 YLIPALEVIDYLRGSEGFDGK 424


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 190 LAPNDGQVEAVTGYSANIIHRDQLDNLLIL 279
           ++PN G  +  + + A II+   +DNL IL
Sbjct: 441 ISPNSGPYKVDSTHEARIINYSYVDNLYIL 470


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 VYYVGTVTSDSFDLSVVWSQLLVW 178
           VYYVG   +DS+ ++V +S    W
Sbjct: 79  VYYVGDNNNDSYIINVPFSTESAW 102


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 103 SIWILLILEVIDYIRWQEGYN 165
           S++I +++E +    WQE YN
Sbjct: 360 SLYIDILMEALRRTEWQESYN 380


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 86 ILTVKYHEALRLTHSSQCPTVHLIHN 9
          +LT+K  E   L    +CP++ ++H+
Sbjct: 13 LLTLKQWEKFSLFQWQECPSIKILHD 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,459
Number of Sequences: 5004
Number of extensions: 30835
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)