Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244     29   1.9  
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    27   4.4  
03_01_0169 + 1385813-1388359                                           27   4.4  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    27   5.8  
05_06_0230 + 26585439-26586608                                         27   7.7  
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648...    27   7.7  

>06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244
          Length = 187

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 192 QLLVWKYFPIVTFLPADVIDDF 127
           QLL+WK+  +V F P  V+D F
Sbjct: 163 QLLLWKFSHLVVFRPFQVLDGF 184


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = +1

Query: 121 ILEVIDYIRWQEGYNGEIFPYQQLAPNDGQVEAVTGYSANIIHRDQLDNLLILL 282
           + E ++Y++ +     + F Y+ L  +DG  +  +  +   + + ++DN+ +LL
Sbjct: 131 LTETLNYLKQRSAVE-KSFTYEVLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLL 183


>03_01_0169 + 1385813-1388359
          Length = 848

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 223 TGYSANIIHRD-QLDNLLILLAFHIK 297
           TGYS NIIHRD +  N+L+  AF  K
Sbjct: 624 TGYSENIIHRDVKSTNILLGDAFIAK 649


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 112 ILLILEVIDYIRWQEGY 162
           +L IL++I ++RW EGY
Sbjct: 946 VLQILQIIIHLRWSEGY 962


>05_06_0230 + 26585439-26586608
          Length = 389

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 148 WQEGYNGEIFPYQQLAPNDGQVEAVTGYSANIIHRDQLDNLLILLAFHI---K*PKIQIK 318
           W+ G    + PY +  PN   +EAV     ++IH D   + LI L   I   + P+ Q +
Sbjct: 159 WRMGDQVVLPPYWEQVPNQPMIEAV---PVDLIHHDGAFHFLIRLEHIIVCEEPPEFQEE 215

Query: 319 MMNIIQV 339
            ++++ V
Sbjct: 216 AVHLVPV 222


>02_02_0586 -
           11861509-11861637,11863651-11863815,11864738-11864846,
           11864971-11865065,11865169-11865702,11866299-11866499,
           11867826-11868090,11868111-11868736
          Length = 707

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 DYIRWQEGYNGEIFPYQQLAPNDGQVEAVTGYSANIIH 249
           D  R+ +G   E+FP    AP D QV     YS +  H
Sbjct: 623 DSKRFSDGQVQEVFPKGSPAPQDQQVPRTNTYSPDNDH 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,729
Number of Sequences: 37544
Number of extensions: 178319
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)