Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08639-1|CAA69929.1|  459|Homo sapiens nuclear orphan receptor R...    31   1.5  
BC093774-1|AAH93774.1|  459|Homo sapiens RAR-related orphan rece...    31   1.5  
BC093772-1|AAH93772.1|  459|Homo sapiens RAR-related orphan rece...    31   1.5  
BC051830-1|AAH51830.1|  459|Homo sapiens RAR-related orphan rece...    31   1.5  
AL355674-1|CAD13280.2|  459|Homo sapiens RAR-related orphan rece...    31   1.5  
AL137018-1|CAD13276.2|  459|Homo sapiens RAR-related orphan rece...    31   1.5  

>Y08639-1|CAA69929.1|  459|Homo sapiens nuclear orphan receptor
           ROR-beta protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


>BC093774-1|AAH93774.1|  459|Homo sapiens RAR-related orphan
           receptor B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


>BC093772-1|AAH93772.1|  459|Homo sapiens RAR-related orphan
           receptor B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


>BC051830-1|AAH51830.1|  459|Homo sapiens RAR-related orphan
           receptor B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


>AL355674-1|CAD13280.2|  459|Homo sapiens RAR-related orphan
           receptor B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


>AL137018-1|CAD13276.2|  459|Homo sapiens RAR-related orphan
           receptor B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 87  ENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRSCHWLQC 236
           +N IK H++T  +    LH LA    W   +   I + +  SR   W QC
Sbjct: 217 QNIIKSHLETCQYTMEELHQLA----WQTHTYEEIKAYQSKSREALWQQC 262


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,867,464
Number of Sequences: 237096
Number of extensions: 1032975
Number of successful extensions: 2138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)