Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical
           protein F35F11.1 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 84  NENSIKEHMDTAHFGSHRLHPLARRLQWGNISIPTIGSKRRTSRS 218
           N   I  H+   HF   +  P+A+ +QW    IP   +KR   ++
Sbjct: 465 NPTDIFTHIPAFHFHVDQDKPVAQVMQWNVHKIPVSATKRHMDKA 509


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 122 MSSIHMLFNRVFILTVKYHEAL 57
           M  +H++++R+F +TV Y+ A+
Sbjct: 1   MHKVHIIYSRIFQMTVTYNRAV 22


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 210 LSVVWSQLLVWKYFPIVTFLPADVIDDFQNEQYPY 106
           L V W +L++    PI+   PAD   D   ++Y +
Sbjct: 553 LPVEWQKLMIQDDSPIIDLYPADFRIDLNGKKYAW 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,219,366
Number of Sequences: 27780
Number of extensions: 171512
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)