Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1142
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative...    27   3.7  
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    27   3.7  
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to...    27   4.9  
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    27   6.5  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    27   6.5  
At1g50750.1 68414.m05707 expressed protein                             26   8.6  

>At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative
           strong similarity to SP|P49299 Citrate synthase,
           glyoxysomal precursor {Cucurbita maxima}; contains Pfam
           profile PF00285: Citrate synthase
          Length = 509

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 101 RAYGYCSFWKSSITSAGKKVTMGKYFHTNNWLQ 199
           R  GY S WK S+     K+   +  +T  WL+
Sbjct: 439 RMAGYLSHWKESLDDPDTKIMRPQQVYTGVWLR 471


>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 249 VYYVGTVTSDSFDLSVV-WSQLLVWKYFPIVTFLPADVIDDFQNEQYPYAL**SFHF 82
           V YVG++ +D         SQ L+ K+  + TFLP+D+++ + +    + L   FH+
Sbjct: 95  VVYVGSLNADVLPSEQEDVSQFLLEKFQCVPTFLPSDLLNKYYHGFCKHYLWPIFHY 151


>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859; contains Pfam profile PF02902: Ulp1 protease
           family, C-terminal catalytic domain
          Length = 502

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 216 FDLSVVWSQLLVWKYFPIVTFLPADV 139
           FDLSV+W Q+L ++ +    F P D+
Sbjct: 15  FDLSVLWDQILNFEGYGSYCFRPMDM 40


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 124 LEVIDYIRWQEGYNGEIFPYQQLAPNDGQVEAVTGYSANIIHRDQLDNLL 273
           +E +  I  +  YN EI   +   P    + +V     ++I  DQ+DNL+
Sbjct: 153 VEKVQLIELKRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDNLI 202


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 124 LEVIDYIRWQEGYNGEIFPYQQLAPNDGQVEAVTGYSANIIHRDQLDNLL 273
           +E +  I  +  YN EI   +   P    + +V     ++I  DQ+DNL+
Sbjct: 777 VEKVQLIELRRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDNLI 826


>At1g50750.1 68414.m05707 expressed protein
          Length = 816

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 300 TEDSNKDDEYNSSDRPRRIKIYMNK 374
           T+DSNK   YN   R +R+K YM +
Sbjct: 413 TDDSNKRRNYNKQARDKRLK-YMKQ 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,482,729
Number of Sequences: 28952
Number of extensions: 154438
Number of successful extensions: 361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)