Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1141
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   3.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   4.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   6.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   9.1  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 SVCKKEKKYIDGELVVSRGCTWKRQDDFE 357
           +V   +  Y++ E+V  +   W+R  DFE
Sbjct: 32  TVTSSDGSYVEYEIVHQKRSVWRRYSDFE 60


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 180 ILKGSLHSGFTLDEHAQQFTGSLSFT 103
           ++  SLH+ F  + HA   TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 126 FTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLS 25
           F GSL FT+  R+KT      F+++  +KL + +
Sbjct: 730 FKGSLLFTDDKRNKTEDSTVFFSMICSSKLDQFA 763


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 217 RKLRQECWSYLSFLTASKSV 276
           RK+R++CW    F   SK V
Sbjct: 562 RKMRRKCWRVYHFTARSKDV 581


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 42  YCAS*WQNYRFLCPFCFLRY 101
           YC S     RFL  FCF+ Y
Sbjct: 8   YCPSSKVTARFLVKFCFIEY 27


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +1

Query: 163 QRSF*YPYRHREFLFVPPRKLRQECWSYLSFLTASKSVCKKEKKYIDGELV 315
           +R+F   Y   + +++ P  + Q+ WS  S  TA +++    K   +G+++
Sbjct: 560 ERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGDIL 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,111
Number of Sequences: 5004
Number of extensions: 34244
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)