BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1141 (444 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0579 - 25181389-25182289,25182556-25182584 31 0.55 06_02_0214 + 13141213-13143741 29 1.7 09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 28 3.9 01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 3.9 10_01_0269 - 2865731-2865752,2866627-2868605 27 5.1 03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 27 5.1 06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669 27 6.8 04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887 27 6.8 03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 6.8 12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 27 9.0 03_02_0902 + 12278770-12281448 27 9.0 >11_06_0579 - 25181389-25182289,25182556-25182584 Length = 309 Score = 30.7 bits (66), Expect = 0.55 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = -3 Query: 361 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILVAVFEAEQIRIPGVDT 182 R HP SR +L + I CI K ++ G LV + A + V T Sbjct: 10 RKHLHPESSRIEWSGELQQYNMID--ECIHEKKAGRQLGRVMRLVGIGRACSTKPVKVST 67 Query: 181 DIKRIVAQRI 152 D+KR++ ++ Sbjct: 68 DVKRLILDKM 77 >06_02_0214 + 13141213-13143741 Length = 842 Score = 29.1 bits (62), Expect = 1.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 Query: 134 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 229 A S+ N L N + +D+G SYL R CD Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315 >09_06_0224 + 21661317-21661386,21663735-21663865,21663904-21663983, 21664248-21664372,21664745-21664830,21664932-21665168, 21665261-21665380,21665502-21665602,21665655-21665758, 21665851-21666047 Length = 416 Score = 27.9 bits (59), Expect = 3.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +1 Query: 211 PPRKLRQECWSYLSFLTASKSVCKKEKKYIDGELVVSRGCT 333 PP + WS+ F S K+ K Y GEL ++ C+ Sbjct: 22 PPGPTHRCYWSFSRFWLQQNSNLKRSKGYEQGELSLAHHCS 62 >01_06_1758 - 39681942-39682030,39682115-39682345,39682643-39682679, 39683604-39683835,39683937-39684022,39684126-39684218, 39684302-39684465,39684541-39684702,39684783-39684962, 39685079-39685515,39685614-39685669 Length = 588 Score = 27.9 bits (59), Expect = 3.9 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 217 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 119 EA+++ G + I++IVAQ +R R T++W Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343 >10_01_0269 - 2865731-2865752,2866627-2868605 Length = 666 Score = 27.5 bits (58), Expect = 5.1 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -1 Query: 189 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 94 ++R L G L SG T+ EH++ GS S NSA Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317 >03_06_0243 + 32598782-32598793,32599037-32599123,32601052-32601257, 32601342-32601453,32601628-32601724,32601815-32601924, 32601996-32602153,32602559-32602697,32602776-32602892, 32603084-32603140,32603280-32603351,32603617-32603736, 32603818-32603983,32604067-32604188,32604373-32604447, 32604636-32604775,32604860-32604922,32605002-32605065, 32605161-32605296,32605401-32605474,32605570-32605664, 32605761-32605792,32606344-32606474,32606595-32606827, 32606916-32607723,32607815-32607967 Length = 1192 Score = 27.5 bits (58), Expect = 5.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 183 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 82 RI + LH+ +T D AQ+F L + +S R KT Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376 >06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669 Length = 387 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 282 ERKEIH*W*ISCESWLHLETPG*LRSRLP 368 ER +H W S + W HLE L++ LP Sbjct: 271 ERSNLHLWSKSMDQWEHLEDVRDLKTLLP 299 >04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887 Length = 408 Score = 27.1 bits (57), Expect = 6.8 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 277 IQTSKLSKRKGS--SSILVAVFEAEQIRIPGVDTDIKRIVAQRI 152 +QTS LS+R + + V V + R+PG D D R RI Sbjct: 79 VQTSVLSRRWRNLWRGVRVVVIDVGSFRLPGADGDPPRFRLDRI 122 >03_06_0327 - 33158131-33158315,33158586-33158639,33159149-33159180, 33159275-33159369,33159466-33159539,33159643-33159778, 33159874-33159937,33160017-33160079,33160160-33160299, 33160487-33160627,33160747-33160868,33160947-33161112, 33161194-33161313,33161580-33161651,33161787-33161843, 33162036-33162152,33162231-33162369,33162794-33162900, 33162972-33163081,33163172-33163305,33163397-33163546, 33163635-33163840,33166123-33166818 Length = 1059 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 165 LHSGFTLDEHAQQFTGSLSFTNSARSKT 82 LH+ +T D AQ+F L + +S R KT Sbjct: 556 LHNKYTEDRFAQEFGIKLKYHDSGREKT 583 >12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 Length = 1072 Score = 26.6 bits (56), Expect = 9.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 361 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILV 227 RL + G + N D + + + S + C + +K + SSSILV Sbjct: 951 RLAALEGDEKENEDMSVSNQEIGSHMDCQEVNKKGNNESSSSILV 995 >03_02_0902 + 12278770-12281448 Length = 892 Score = 26.6 bits (56), Expect = 9.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 143 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAG 241 +NVN N + +++D G YL RL C+ +G Sbjct: 307 NNVNLQYNLTWAMQVDAGYQYLVRLHFCEIQSG 339 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,297,919 Number of Sequences: 37544 Number of extensions: 217605 Number of successful extensions: 611 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 611 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 847740284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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