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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1141
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0579 - 25181389-25182289,25182556-25182584                       31   0.55 
06_02_0214 + 13141213-13143741                                         29   1.7  
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639...    28   3.9  
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    28   3.9  
10_01_0269 - 2865731-2865752,2866627-2868605                           27   5.1  
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012...    27   5.1  
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669           27   6.8  
04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887     27   6.8  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    27   6.8  
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730           27   9.0  
03_02_0902 + 12278770-12281448                                         27   9.0  

>11_06_0579 - 25181389-25182289,25182556-25182584
          Length = 309

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -3

Query: 361 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILVAVFEAEQIRIPGVDT 182
           R   HP  SR     +L  +  I    CI   K  ++ G    LV +  A   +   V T
Sbjct: 10  RKHLHPESSRIEWSGELQQYNMID--ECIHEKKAGRQLGRVMRLVGIGRACSTKPVKVST 67

Query: 181 DIKRIVAQRI 152
           D+KR++  ++
Sbjct: 68  DVKRLILDKM 77


>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 134 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 229
           A S+  N L N  +   +D+G SYL R   CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315


>09_06_0224 +
           21661317-21661386,21663735-21663865,21663904-21663983,
           21664248-21664372,21664745-21664830,21664932-21665168,
           21665261-21665380,21665502-21665602,21665655-21665758,
           21665851-21666047
          Length = 416

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 211 PPRKLRQECWSYLSFLTASKSVCKKEKKYIDGELVVSRGCT 333
           PP    +  WS+  F     S  K+ K Y  GEL ++  C+
Sbjct: 22  PPGPTHRCYWSFSRFWLQQNSNLKRSKGYEQGELSLAHHCS 62


>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 217 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 119
           EA+++   G +  I++IVAQ   +R  R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343


>10_01_0269 - 2865731-2865752,2866627-2868605
          Length = 666

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 189 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 94
           ++R L G L SG T+ EH++   GS S  NSA
Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317


>03_06_0243 +
           32598782-32598793,32599037-32599123,32601052-32601257,
           32601342-32601453,32601628-32601724,32601815-32601924,
           32601996-32602153,32602559-32602697,32602776-32602892,
           32603084-32603140,32603280-32603351,32603617-32603736,
           32603818-32603983,32604067-32604188,32604373-32604447,
           32604636-32604775,32604860-32604922,32605002-32605065,
           32605161-32605296,32605401-32605474,32605570-32605664,
           32605761-32605792,32606344-32606474,32606595-32606827,
           32606916-32607723,32607815-32607967
          Length = 1192

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 183 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 82
           RI +  LH+ +T D  AQ+F   L + +S R KT
Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376


>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
          Length = 387

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 282 ERKEIH*W*ISCESWLHLETPG*LRSRLP 368
           ER  +H W  S + W HLE    L++ LP
Sbjct: 271 ERSNLHLWSKSMDQWEHLEDVRDLKTLLP 299


>04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887
          Length = 408

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 277 IQTSKLSKRKGS--SSILVAVFEAEQIRIPGVDTDIKRIVAQRI 152
           +QTS LS+R  +    + V V +    R+PG D D  R    RI
Sbjct: 79  VQTSVLSRRWRNLWRGVRVVVIDVGSFRLPGADGDPPRFRLDRI 122


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 165 LHSGFTLDEHAQQFTGSLSFTNSARSKT 82
           LH+ +T D  AQ+F   L + +S R KT
Sbjct: 556 LHNKYTEDRFAQEFGIKLKYHDSGREKT 583


>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
          Length = 1072

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 361  RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILV 227
            RL +  G  + N D  + + +  S + C + +K    + SSSILV
Sbjct: 951  RLAALEGDEKENEDMSVSNQEIGSHMDCQEVNKKGNNESSSSILV 995


>03_02_0902 + 12278770-12281448
          Length = 892

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 143 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAG 241
           +NVN   N  + +++D G  YL RL  C+  +G
Sbjct: 307 NNVNLQYNLTWAMQVDAGYQYLVRLHFCEIQSG 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,919
Number of Sequences: 37544
Number of extensions: 217605
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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