Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1141
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0579 - 25181389-25182289,25182556-25182584 31 0.55
06_02_0214 + 13141213-13143741 29 1.7
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 28 3.9
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 3.9
10_01_0269 - 2865731-2865752,2866627-2868605 27 5.1
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 27 5.1
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669 27 6.8
04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887 27 6.8
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 6.8
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 27 9.0
03_02_0902 + 12278770-12281448 27 9.0
>11_06_0579 - 25181389-25182289,25182556-25182584
Length = 309
Score = 30.7 bits (66), Expect = 0.55
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 361 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILVAVFEAEQIRIPGVDT 182
R HP SR +L + I CI K ++ G LV + A + V T
Sbjct: 10 RKHLHPESSRIEWSGELQQYNMID--ECIHEKKAGRQLGRVMRLVGIGRACSTKPVKVST 67
Query: 181 DIKRIVAQRI 152
D+KR++ ++
Sbjct: 68 DVKRLILDKM 77
>06_02_0214 + 13141213-13143741
Length = 842
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 134 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 229
A S+ N L N + +D+G SYL R CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315
>09_06_0224 +
21661317-21661386,21663735-21663865,21663904-21663983,
21664248-21664372,21664745-21664830,21664932-21665168,
21665261-21665380,21665502-21665602,21665655-21665758,
21665851-21666047
Length = 416
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 211 PPRKLRQECWSYLSFLTASKSVCKKEKKYIDGELVVSRGCT 333
PP + WS+ F S K+ K Y GEL ++ C+
Sbjct: 22 PPGPTHRCYWSFSRFWLQQNSNLKRSKGYEQGELSLAHHCS 62
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 217 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 119
EA+++ G + I++IVAQ +R R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 189 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 94
++R L G L SG T+ EH++ GS S NSA
Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 183 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 82
RI + LH+ +T D AQ+F L + +S R KT
Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376
>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
Length = 387
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 282 ERKEIH*W*ISCESWLHLETPG*LRSRLP 368
ER +H W S + W HLE L++ LP
Sbjct: 271 ERSNLHLWSKSMDQWEHLEDVRDLKTLLP 299
>04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887
Length = 408
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 277 IQTSKLSKRKGS--SSILVAVFEAEQIRIPGVDTDIKRIVAQRI 152
+QTS LS+R + + V V + R+PG D D R RI
Sbjct: 79 VQTSVLSRRWRNLWRGVRVVVIDVGSFRLPGADGDPPRFRLDRI 122
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 165 LHSGFTLDEHAQQFTGSLSFTNSARSKT 82
LH+ +T D AQ+F L + +S R KT
Sbjct: 556 LHNKYTEDRFAQEFGIKLKYHDSGREKT 583
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 361 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILV 227
RL + G + N D + + + S + C + +K + SSSILV
Sbjct: 951 RLAALEGDEKENEDMSVSNQEIGSHMDCQEVNKKGNNESSSSILV 995
>03_02_0902 + 12278770-12281448
Length = 892
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 143 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAG 241
+NVN N + +++D G YL RL C+ +G
Sbjct: 307 NNVNLQYNLTWAMQVDAGYQYLVRLHFCEIQSG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,919
Number of Sequences: 37544
Number of extensions: 217605
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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