Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1141
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)       29   2.3  
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     27   7.0  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                  27   9.2  

>SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)
          Length = 104

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +1

Query: 226 RQECWSYLSFLTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLF 405
           R   W+ +S        CK +  Y   +  V  G  W+    + V  P+  N+ N  N+ 
Sbjct: 11  RALAWTGISVPGLFVPECKPDGTYEGMQCHVGTGLCWQYDSIYGVFSPSCENDGNYTNIQ 70

Query: 406 CQT 414
           C +
Sbjct: 71  CHS 73


>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/80 (23%), Positives = 42/80 (52%)
 Frame = -1

Query: 240 PAFLSQFSRRNK*EFPVSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSF 61
           P F   F  + +  +P ++ I    +H+  T+   A+  + +L  T+S+ SK GT+ +SF
Sbjct: 105 PVFHRDFIAKLRGSYPTAL-IQPKLVHTISTVMNEAELMSLNLD-TDSSASKDGTKLESF 162

Query: 60  AIMMHNKLTRLSENTRDVYR 1
              +    + +S+N +++ +
Sbjct: 163 TEDIQQSNSYISDNLKELLK 182


>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +1

Query: 226 RQECWSYLSFLTASKSVCKKEKKYIDGEL----VVSRGCTWKRQDDFEVGCPTSRNEANE 393
           R+EC  Y  F   +K+ C+       GE+      +R      Q++ E+GCP       E
Sbjct: 44  REECHQYAGFCCLAKARCENTLTNSAGEVEALTEAARLFLKAEQENLELGCPAFEEHLTE 103


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 346  DDFEVGCPTSRNEANEVNLFCQTCD 420
            DD  +G P ++ EA E++ FC  CD
Sbjct: 1389 DDI-LGFPITQEEAEEISEFCTRCD 1412


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +1

Query: 268 KSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLFCQTCDYDGCN 435
           K VC      IDG L   RGC    Q      C    N A++  + C  C+ D CN
Sbjct: 44  KDVCVTVNGTIDGSLNHFRGCAMNNQCS---DCTQFMN-ASDCKIAC--CNTDNCN 93


>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 931

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = -3

Query: 352 SHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSKRKGSSSILVAVFEAEQIRIPGVDTDIK 173
           S PG S C HD  +  HQ  +  S       +   G+ S  +    A ++  PG++  IK
Sbjct: 51  SLPGASYCRHDFDVYAHQSETQYSGPVPDPNNSPPGTYS-NIGTLNATKLS-PGINDKIK 108

Query: 172 RIVAQRIHVRRTRPTIH 122
            +      +  ++P ++
Sbjct: 109 NVQTLSFTLENSKPYVY 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,473
Number of Sequences: 59808
Number of extensions: 278524
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)