Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000051A276 Cluster: PREDICTED: similar to CG5047-PA;...    34   2.7  
UniRef50_UPI00004D9CAF Cluster: PHD finger protein 2 (GRC5).; n=...    33   6.2  
UniRef50_Q4P2L5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_A5DAS7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q54E47 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  
UniRef50_Q6FK15 Cluster: Similar to sp|P38244 Saccharomyces cere...    33   8.2  

>UniRef50_UPI000051A276 Cluster: PREDICTED: similar to CG5047-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG5047-PA
           - Apis mellifera
          Length = 319

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 502 FDTQTPKLFTQPTSEVKKRNVLLPFNNSTVKSLIQILNKHLK*LKFK 642
           F T+ PK+F +   +++ R   L ++N +VK +  I+NKH   L F+
Sbjct: 111 FITRNPKIFKEDIDDLRTRIRYLRYHNFSVKMIESIVNKHPPWLSFE 157


>UniRef50_UPI00004D9CAF Cluster: PHD finger protein 2 (GRC5).; n=1;
           Xenopus tropicalis|Rep: PHD finger protein 2 (GRC5). -
           Xenopus tropicalis
          Length = 794

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 245 SKRADTPDSSFLSADESDDDSVGETVSKKPSTNNKINRD 361
           SK+    +S + S D SD+DS+     +KP+ N+++ +D
Sbjct: 425 SKKPKVQESKYKSDDTSDEDSLHIDTEEKPARNSRVKKD 463


>UniRef50_Q4P2L5 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1244

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 380 LLQVCRSPYLFYYLLKASWRPFRLPNHHRSRQQTKNL 270
           LL VC S  +F++ L+AS RP     HHR    T +L
Sbjct: 496 LLAVCSSDTIFWFDLQASLRPLFSTEHHRGDDPTLSL 532


>UniRef50_A5DAS7 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 346

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
 Frame = +2

Query: 209 ANVSFIS*FDASSKRA-DTPDSSFLSADESDDDSVG----ETVSKKPSTNN 346
           +N S +S   ASS R   TP+SSF+  D+S D+S+G    ET  ++PS+ N
Sbjct: 225 SNTSVVS--SASSSRFYTTPNSSFIQNDDSFDNSIGLVLNETKKRQPSSLN 273


>UniRef50_Q54E47 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 956

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 203 SDANVSFIS*FDASSKRADTPDSSFLSADESDDDSVGETVSKKP---STNNKINRDFYTP 373
           +  N S  + FD+ +  + + + S +S D+ DD+ V +T  K+P   STN+    +  TP
Sbjct: 416 NSTNTSLNTSFDSETSSSSSLNLSNISNDDIDDNQVFKTPIKRPLLSSTNSSSGNNSATP 475

Query: 374 VIK 382
           + K
Sbjct: 476 LFK 478


>UniRef50_Q6FK15 Cluster: Similar to sp|P38244 Saccharomyces
           cerevisiae YBR074w; n=1; Candida glabrata|Rep: Similar
           to sp|P38244 Saccharomyces cerevisiae YBR074w - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 947

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 111 QNNYQEPVIKYNTVFKMSGNTESTSNSIKFA 203
           Q++ Q PV K++ +   + NT S SNSIK+A
Sbjct: 815 QSSKQSPVKKFSVIKSNNNNTNSVSNSIKYA 845


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,122,187
Number of Sequences: 1657284
Number of extensions: 9643372
Number of successful extensions: 24952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24915
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)